Experiment: m.b. Thallium(I) acetate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4151 and HP15_4152 are separated by 770 nucleotides HP15_4152 and HP15_4153 are separated by 94 nucleotides HP15_4153 and HP15_4154 are separated by 78 nucleotides
HP15_4151: HP15_4151 - GGDEF domain-like protein, at 4,387,208 to 4,388,401
_4151
HP15_4152: HP15_4152 - conserved hypothetical protein, at 4,389,172 to 4,389,951
_4152
HP15_4153: HP15_4153 - hypothetical protein, at 4,390,046 to 4,390,633
_4153
HP15_4154: HP15_4154 - glycosyl transferase family protein, at 4,390,712 to 4,391,338
_4154
Position (kb)
4389
4390 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4388.203 kb on + strand, within HP15_4151 at 4388.257 kb on + strand, within HP15_4151 at 4388.283 kb on - strand at 4388.586 kb on + strand at 4388.637 kb on + strand at 4388.675 kb on - strand at 4388.675 kb on - strand at 4388.703 kb on - strand at 4388.705 kb on + strand at 4388.728 kb on + strand at 4388.743 kb on + strand at 4388.743 kb on + strand at 4388.751 kb on - strand at 4388.876 kb on - strand at 4388.975 kb on - strand at 4388.991 kb on + strand at 4388.997 kb on - strand at 4389.235 kb on + strand at 4389.405 kb on + strand, within HP15_4152 at 4389.507 kb on - strand, within HP15_4152 at 4389.557 kb on + strand, within HP15_4152 at 4389.596 kb on + strand, within HP15_4152 at 4389.609 kb on - strand, within HP15_4152 at 4389.637 kb on - strand, within HP15_4152 at 4389.652 kb on - strand, within HP15_4152 at 4389.735 kb on - strand, within HP15_4152 at 4389.735 kb on - strand, within HP15_4152 at 4389.738 kb on - strand, within HP15_4152 at 4389.760 kb on - strand, within HP15_4152 at 4389.940 kb on + strand at 4389.948 kb on - strand at 4389.948 kb on - strand at 4389.953 kb on - strand at 4389.953 kb on - strand at 4389.953 kb on - strand at 4389.971 kb on + strand at 4390.021 kb on + strand at 4390.180 kb on - strand, within HP15_4153 at 4390.197 kb on + strand, within HP15_4153 at 4390.242 kb on + strand, within HP15_4153 at 4390.344 kb on + strand, within HP15_4153 at 4390.344 kb on + strand, within HP15_4153 at 4390.359 kb on + strand, within HP15_4153 at 4390.359 kb on + strand, within HP15_4153 at 4390.367 kb on - strand, within HP15_4153 at 4390.397 kb on - strand, within HP15_4153 at 4390.401 kb on + strand, within HP15_4153 at 4390.409 kb on - strand, within HP15_4153 at 4390.409 kb on - strand, within HP15_4153 at 4390.421 kb on + strand, within HP15_4153 at 4390.425 kb on - strand, within HP15_4153 at 4390.437 kb on - strand, within HP15_4153 at 4390.456 kb on + strand, within HP15_4153 at 4390.464 kb on - strand, within HP15_4153 at 4390.555 kb on - strand, within HP15_4153 at 4390.634 kb on - strand at 4390.634 kb on - strand at 4390.634 kb on - strand at 4390.639 kb on + strand at 4390.641 kb on - strand at 4390.772 kb on - strand at 4390.859 kb on + strand, within HP15_4154 at 4390.867 kb on + strand, within HP15_4154 at 4390.891 kb on + strand, within HP15_4154 at 4390.891 kb on + strand, within HP15_4154 at 4390.891 kb on + strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.899 kb on - strand, within HP15_4154 at 4390.936 kb on - strand, within HP15_4154
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml remove 4,388,203 + HP15_4151 0.83 -0.4 4,388,257 + HP15_4151 0.88 +1.2 4,388,283 - +0.8 4,388,586 + -2.7 4,388,637 + +0.4 4,388,675 - +0.3 4,388,675 - +0.4 4,388,703 - -0.2 4,388,705 + +0.2 4,388,728 + +0.3 4,388,743 + -0.4 4,388,743 + -0.3 4,388,751 - -0.0 4,388,876 - +0.2 4,388,975 - +0.4 4,388,991 + +0.9 4,388,997 - -0.0 4,389,235 + -0.1 4,389,405 + HP15_4152 0.30 +0.6 4,389,507 - HP15_4152 0.43 +1.6 4,389,557 + HP15_4152 0.49 +2.0 4,389,596 + HP15_4152 0.54 -0.4 4,389,609 - HP15_4152 0.56 +0.0 4,389,637 - HP15_4152 0.60 +0.5 4,389,652 - HP15_4152 0.62 +0.8 4,389,735 - HP15_4152 0.72 +0.1 4,389,735 - HP15_4152 0.72 +0.3 4,389,738 - HP15_4152 0.73 +1.1 4,389,760 - HP15_4152 0.75 +0.5 4,389,940 + +0.4 4,389,948 - +0.7 4,389,948 - -1.6 4,389,953 - +2.6 4,389,953 - +0.7 4,389,953 - -1.1 4,389,971 + -0.3 4,390,021 + +0.2 4,390,180 - HP15_4153 0.23 -0.3 4,390,197 + HP15_4153 0.26 -0.0 4,390,242 + HP15_4153 0.33 +0.1 4,390,344 + HP15_4153 0.51 +0.2 4,390,344 + HP15_4153 0.51 +0.6 4,390,359 + HP15_4153 0.53 +0.5 4,390,359 + HP15_4153 0.53 +0.7 4,390,367 - HP15_4153 0.55 -0.4 4,390,397 - HP15_4153 0.60 +0.3 4,390,401 + HP15_4153 0.60 -0.4 4,390,409 - HP15_4153 0.62 +0.6 4,390,409 - HP15_4153 0.62 -0.4 4,390,421 + HP15_4153 0.64 -0.4 4,390,425 - HP15_4153 0.64 +0.6 4,390,437 - HP15_4153 0.66 -0.6 4,390,456 + HP15_4153 0.70 +0.2 4,390,464 - HP15_4153 0.71 +0.2 4,390,555 - HP15_4153 0.87 -0.4 4,390,634 - -0.8 4,390,634 - +0.0 4,390,634 - +0.2 4,390,639 + -2.2 4,390,641 - +0.1 4,390,772 - -0.8 4,390,859 + HP15_4154 0.23 +1.7 4,390,867 + HP15_4154 0.25 +0.2 4,390,891 + HP15_4154 0.29 +0.9 4,390,891 + HP15_4154 0.29 +0.4 4,390,891 + HP15_4154 0.29 +1.0 4,390,899 - HP15_4154 0.30 +0.9 4,390,899 - HP15_4154 0.30 -0.3 4,390,899 - HP15_4154 0.30 -0.1 4,390,899 - HP15_4154 0.30 +1.0 4,390,899 - HP15_4154 0.30 +0.8 4,390,899 - HP15_4154 0.30 +1.0 4,390,899 - HP15_4154 0.30 +0.2 4,390,899 - HP15_4154 0.30 -0.4 4,390,899 - HP15_4154 0.30 -0.3 4,390,899 - HP15_4154 0.30 +0.4 4,390,936 - HP15_4154 0.36 +1.2
Or see this region's nucleotide sequence