Strain Fitness in Marinobacter adhaerens HP15 around HP15_4152

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4151 and HP15_4152 are separated by 770 nucleotidesHP15_4152 and HP15_4153 are separated by 94 nucleotidesHP15_4153 and HP15_4154 are separated by 78 nucleotides HP15_4151: HP15_4151 - GGDEF domain-like protein, at 4,387,208 to 4,388,401 _4151 HP15_4152: HP15_4152 - conserved hypothetical protein, at 4,389,172 to 4,389,951 _4152 HP15_4153: HP15_4153 - hypothetical protein, at 4,390,046 to 4,390,633 _4153 HP15_4154: HP15_4154 - glycosyl transferase family protein, at 4,390,712 to 4,391,338 _4154 Position (kb) 4389 4390Strain fitness (log2 ratio) -2 -1 0 1 2at 4388.203 kb on + strand, within HP15_4151at 4388.257 kb on + strand, within HP15_4151at 4388.283 kb on - strandat 4388.586 kb on + strandat 4388.637 kb on + strandat 4388.675 kb on - strandat 4388.675 kb on - strandat 4388.703 kb on - strandat 4388.705 kb on + strandat 4388.728 kb on + strandat 4388.743 kb on + strandat 4388.743 kb on + strandat 4388.751 kb on - strandat 4388.876 kb on - strandat 4388.975 kb on - strandat 4388.991 kb on + strandat 4388.997 kb on - strandat 4389.235 kb on + strandat 4389.405 kb on + strand, within HP15_4152at 4389.507 kb on - strand, within HP15_4152at 4389.557 kb on + strand, within HP15_4152at 4389.596 kb on + strand, within HP15_4152at 4389.609 kb on - strand, within HP15_4152at 4389.637 kb on - strand, within HP15_4152at 4389.652 kb on - strand, within HP15_4152at 4389.735 kb on - strand, within HP15_4152at 4389.735 kb on - strand, within HP15_4152at 4389.738 kb on - strand, within HP15_4152at 4389.760 kb on - strand, within HP15_4152at 4389.940 kb on + strandat 4389.948 kb on - strandat 4389.948 kb on - strandat 4389.953 kb on - strandat 4389.953 kb on - strandat 4389.953 kb on - strandat 4389.971 kb on + strandat 4390.021 kb on + strandat 4390.180 kb on - strand, within HP15_4153at 4390.197 kb on + strand, within HP15_4153at 4390.242 kb on + strand, within HP15_4153at 4390.344 kb on + strand, within HP15_4153at 4390.344 kb on + strand, within HP15_4153at 4390.359 kb on + strand, within HP15_4153at 4390.359 kb on + strand, within HP15_4153at 4390.367 kb on - strand, within HP15_4153at 4390.397 kb on - strand, within HP15_4153at 4390.401 kb on + strand, within HP15_4153at 4390.409 kb on - strand, within HP15_4153at 4390.409 kb on - strand, within HP15_4153at 4390.421 kb on + strand, within HP15_4153at 4390.425 kb on - strand, within HP15_4153at 4390.437 kb on - strand, within HP15_4153at 4390.456 kb on + strand, within HP15_4153at 4390.464 kb on - strand, within HP15_4153at 4390.555 kb on - strand, within HP15_4153at 4390.634 kb on - strandat 4390.634 kb on - strandat 4390.634 kb on - strandat 4390.639 kb on + strandat 4390.641 kb on - strandat 4390.772 kb on - strandat 4390.859 kb on + strand, within HP15_4154at 4390.867 kb on + strand, within HP15_4154at 4390.891 kb on + strand, within HP15_4154at 4390.891 kb on + strand, within HP15_4154at 4390.891 kb on + strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.899 kb on - strand, within HP15_4154at 4390.936 kb on - strand, within HP15_4154

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
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4,388,203 + HP15_4151 0.83 -0.4
4,388,257 + HP15_4151 0.88 +1.2
4,388,283 - +0.8
4,388,586 + -2.7
4,388,637 + +0.4
4,388,675 - +0.3
4,388,675 - +0.4
4,388,703 - -0.2
4,388,705 + +0.2
4,388,728 + +0.3
4,388,743 + -0.4
4,388,743 + -0.3
4,388,751 - -0.0
4,388,876 - +0.2
4,388,975 - +0.4
4,388,991 + +0.9
4,388,997 - -0.0
4,389,235 + -0.1
4,389,405 + HP15_4152 0.30 +0.6
4,389,507 - HP15_4152 0.43 +1.6
4,389,557 + HP15_4152 0.49 +2.0
4,389,596 + HP15_4152 0.54 -0.4
4,389,609 - HP15_4152 0.56 +0.0
4,389,637 - HP15_4152 0.60 +0.5
4,389,652 - HP15_4152 0.62 +0.8
4,389,735 - HP15_4152 0.72 +0.1
4,389,735 - HP15_4152 0.72 +0.3
4,389,738 - HP15_4152 0.73 +1.1
4,389,760 - HP15_4152 0.75 +0.5
4,389,940 + +0.4
4,389,948 - +0.7
4,389,948 - -1.6
4,389,953 - +2.6
4,389,953 - +0.7
4,389,953 - -1.1
4,389,971 + -0.3
4,390,021 + +0.2
4,390,180 - HP15_4153 0.23 -0.3
4,390,197 + HP15_4153 0.26 -0.0
4,390,242 + HP15_4153 0.33 +0.1
4,390,344 + HP15_4153 0.51 +0.2
4,390,344 + HP15_4153 0.51 +0.6
4,390,359 + HP15_4153 0.53 +0.5
4,390,359 + HP15_4153 0.53 +0.7
4,390,367 - HP15_4153 0.55 -0.4
4,390,397 - HP15_4153 0.60 +0.3
4,390,401 + HP15_4153 0.60 -0.4
4,390,409 - HP15_4153 0.62 +0.6
4,390,409 - HP15_4153 0.62 -0.4
4,390,421 + HP15_4153 0.64 -0.4
4,390,425 - HP15_4153 0.64 +0.6
4,390,437 - HP15_4153 0.66 -0.6
4,390,456 + HP15_4153 0.70 +0.2
4,390,464 - HP15_4153 0.71 +0.2
4,390,555 - HP15_4153 0.87 -0.4
4,390,634 - -0.8
4,390,634 - +0.0
4,390,634 - +0.2
4,390,639 + -2.2
4,390,641 - +0.1
4,390,772 - -0.8
4,390,859 + HP15_4154 0.23 +1.7
4,390,867 + HP15_4154 0.25 +0.2
4,390,891 + HP15_4154 0.29 +0.9
4,390,891 + HP15_4154 0.29 +0.4
4,390,891 + HP15_4154 0.29 +1.0
4,390,899 - HP15_4154 0.30 +0.9
4,390,899 - HP15_4154 0.30 -0.3
4,390,899 - HP15_4154 0.30 -0.1
4,390,899 - HP15_4154 0.30 +1.0
4,390,899 - HP15_4154 0.30 +0.8
4,390,899 - HP15_4154 0.30 +1.0
4,390,899 - HP15_4154 0.30 +0.2
4,390,899 - HP15_4154 0.30 -0.4
4,390,899 - HP15_4154 0.30 -0.3
4,390,899 - HP15_4154 0.30 +0.4
4,390,936 - HP15_4154 0.36 +1.2

Or see this region's nucleotide sequence