Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04250

Experiment: m.b. copper (II) chloride 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c04230 and PGA1_c04240 are separated by 108 nucleotidesPGA1_c04240 and PGA1_c04250 overlap by 1 nucleotidesPGA1_c04250 and PGA1_c04260 are separated by 3 nucleotides PGA1_c04230: PGA1_c04230 - putative phosphonates metabolism transcriptional regulator phnF, at 410,593 to 411,327 _c04230 PGA1_c04240: PGA1_c04240 - protein PhnG, at 411,436 to 411,912 _c04240 PGA1_c04250: PGA1_c04250 - protein PhnH, at 411,912 to 412,508 _c04250 PGA1_c04260: PGA1_c04260 - protein PhnI, at 412,512 to 413,621 _c04260 Position (kb) 411 412 413Strain fitness (log2 ratio) -2 -1 0 1 2at 411.003 kb on + strand, within PGA1_c04230at 411.016 kb on + strand, within PGA1_c04230at 411.129 kb on + strand, within PGA1_c04230at 411.129 kb on + strand, within PGA1_c04230at 411.164 kb on - strand, within PGA1_c04230at 411.165 kb on - strand, within PGA1_c04230at 411.184 kb on - strand, within PGA1_c04230at 411.194 kb on + strand, within PGA1_c04230at 411.209 kb on - strand, within PGA1_c04230at 411.268 kb on - strandat 411.361 kb on + strandat 411.361 kb on + strandat 411.361 kb on + strandat 411.369 kb on - strandat 411.369 kb on - strandat 411.369 kb on - strandat 411.424 kb on + strandat 411.424 kb on + strandat 411.432 kb on - strandat 411.433 kb on - strandat 411.452 kb on + strandat 411.486 kb on + strand, within PGA1_c04240at 411.500 kb on - strand, within PGA1_c04240at 411.501 kb on - strand, within PGA1_c04240at 411.568 kb on + strand, within PGA1_c04240at 411.594 kb on + strand, within PGA1_c04240at 411.608 kb on + strand, within PGA1_c04240at 411.640 kb on + strand, within PGA1_c04240at 411.648 kb on - strand, within PGA1_c04240at 411.740 kb on - strand, within PGA1_c04240at 411.814 kb on + strand, within PGA1_c04240at 411.816 kb on - strand, within PGA1_c04240at 411.838 kb on + strand, within PGA1_c04240at 411.906 kb on + strandat 411.931 kb on - strandat 412.031 kb on + strand, within PGA1_c04250at 412.031 kb on + strand, within PGA1_c04250at 412.047 kb on - strand, within PGA1_c04250at 412.086 kb on - strand, within PGA1_c04250at 412.151 kb on - strand, within PGA1_c04250at 412.179 kb on + strand, within PGA1_c04250at 412.179 kb on + strand, within PGA1_c04250at 412.179 kb on - strand, within PGA1_c04250at 412.187 kb on - strand, within PGA1_c04250at 412.187 kb on - strand, within PGA1_c04250at 412.189 kb on + strand, within PGA1_c04250at 412.197 kb on - strand, within PGA1_c04250at 412.222 kb on + strand, within PGA1_c04250at 412.223 kb on - strand, within PGA1_c04250at 412.230 kb on - strand, within PGA1_c04250at 412.238 kb on + strand, within PGA1_c04250at 412.258 kb on + strand, within PGA1_c04250at 412.309 kb on - strand, within PGA1_c04250at 412.347 kb on - strand, within PGA1_c04250at 412.354 kb on - strand, within PGA1_c04250at 412.355 kb on - strand, within PGA1_c04250at 412.402 kb on - strand, within PGA1_c04250at 412.459 kb on - strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.463 kb on + strandat 412.471 kb on - strandat 412.490 kb on + strandat 412.579 kb on + strandat 412.602 kb on + strandat 412.610 kb on - strandat 412.610 kb on - strandat 412.614 kb on + strandat 412.639 kb on - strand, within PGA1_c04260at 412.652 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.658 kb on + strand, within PGA1_c04260at 412.660 kb on - strand, within PGA1_c04260at 412.719 kb on + strand, within PGA1_c04260at 412.727 kb on - strand, within PGA1_c04260at 412.727 kb on - strand, within PGA1_c04260at 412.833 kb on + strand, within PGA1_c04260at 412.855 kb on + strand, within PGA1_c04260at 412.870 kb on - strand, within PGA1_c04260at 412.922 kb on - strand, within PGA1_c04260at 412.924 kb on + strand, within PGA1_c04260at 412.943 kb on + strand, within PGA1_c04260at 412.961 kb on - strand, within PGA1_c04260at 413.024 kb on + strand, within PGA1_c04260at 413.032 kb on - strand, within PGA1_c04260at 413.116 kb on - strand, within PGA1_c04260at 413.118 kb on + strand, within PGA1_c04260at 413.126 kb on - strand, within PGA1_c04260at 413.133 kb on - strand, within PGA1_c04260at 413.144 kb on - strand, within PGA1_c04260at 413.240 kb on - strand, within PGA1_c04260at 413.284 kb on + strand, within PGA1_c04260at 413.284 kb on + strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.294 kb on + strand, within PGA1_c04260at 413.302 kb on - strand, within PGA1_c04260at 413.303 kb on + strand, within PGA1_c04260at 413.311 kb on - strand, within PGA1_c04260at 413.324 kb on + strand, within PGA1_c04260at 413.384 kb on - strand, within PGA1_c04260at 413.385 kb on - strand, within PGA1_c04260at 413.395 kb on - strand, within PGA1_c04260at 413.407 kb on + strand, within PGA1_c04260at 413.407 kb on + strand, within PGA1_c04260at 413.429 kb on + strand, within PGA1_c04260at 413.437 kb on + strand, within PGA1_c04260at 413.460 kb on + strand, within PGA1_c04260at 413.486 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.3 mM
remove
411,003 + PGA1_c04230 0.56 -0.9
411,016 + PGA1_c04230 0.58 -0.4
411,129 + PGA1_c04230 0.73 +0.3
411,129 + PGA1_c04230 0.73 +0.9
411,164 - PGA1_c04230 0.78 +0.2
411,165 - PGA1_c04230 0.78 -0.4
411,184 - PGA1_c04230 0.80 +0.0
411,194 + PGA1_c04230 0.82 -0.7
411,209 - PGA1_c04230 0.84 -0.1
411,268 - +0.7
411,361 + +0.6
411,361 + +0.3
411,361 + +0.4
411,369 - -1.3
411,369 - -0.4
411,369 - -0.3
411,424 + -0.3
411,424 + -1.6
411,432 - +0.8
411,433 - +0.8
411,452 + -0.7
411,486 + PGA1_c04240 0.10 -1.5
411,500 - PGA1_c04240 0.13 +0.8
411,501 - PGA1_c04240 0.14 +0.4
411,568 + PGA1_c04240 0.28 +1.6
411,594 + PGA1_c04240 0.33 -0.3
411,608 + PGA1_c04240 0.36 -1.4
411,640 + PGA1_c04240 0.43 +0.5
411,648 - PGA1_c04240 0.44 -0.8
411,740 - PGA1_c04240 0.64 -0.6
411,814 + PGA1_c04240 0.79 -0.2
411,816 - PGA1_c04240 0.80 +0.8
411,838 + PGA1_c04240 0.84 +0.7
411,906 + -0.9
411,931 - -0.3
412,031 + PGA1_c04250 0.20 +0.4
412,031 + PGA1_c04250 0.20 +1.0
412,047 - PGA1_c04250 0.23 -0.1
412,086 - PGA1_c04250 0.29 +1.1
412,151 - PGA1_c04250 0.40 -0.2
412,179 + PGA1_c04250 0.45 +1.0
412,179 + PGA1_c04250 0.45 +0.9
412,179 - PGA1_c04250 0.45 -0.6
412,187 - PGA1_c04250 0.46 +1.3
412,187 - PGA1_c04250 0.46 +1.8
412,189 + PGA1_c04250 0.46 +0.1
412,197 - PGA1_c04250 0.48 +0.4
412,222 + PGA1_c04250 0.52 +1.4
412,223 - PGA1_c04250 0.52 +1.6
412,230 - PGA1_c04250 0.53 -0.4
412,238 + PGA1_c04250 0.55 +0.0
412,258 + PGA1_c04250 0.58 +0.4
412,309 - PGA1_c04250 0.66 -0.4
412,347 - PGA1_c04250 0.73 +0.0
412,354 - PGA1_c04250 0.74 -0.5
412,355 - PGA1_c04250 0.74 +0.1
412,402 - PGA1_c04250 0.82 +0.8
412,459 - +0.4
412,463 + -0.9
412,463 + -0.5
412,463 + -1.2
412,463 + +0.4
412,471 - -0.2
412,490 + +2.6
412,579 + +0.1
412,602 + +0.6
412,610 - +0.4
412,610 - +0.6
412,614 + +1.0
412,639 - PGA1_c04260 0.11 -0.4
412,652 + PGA1_c04260 0.13 -0.5
412,658 + PGA1_c04260 0.13 -1.1
412,658 + PGA1_c04260 0.13 +0.9
412,658 + PGA1_c04260 0.13 +0.4
412,660 - PGA1_c04260 0.13 +0.5
412,719 + PGA1_c04260 0.19 -2.7
412,727 - PGA1_c04260 0.19 +0.9
412,727 - PGA1_c04260 0.19 +0.2
412,833 + PGA1_c04260 0.29 +0.6
412,855 + PGA1_c04260 0.31 +0.0
412,870 - PGA1_c04260 0.32 -0.8
412,922 - PGA1_c04260 0.37 +0.3
412,924 + PGA1_c04260 0.37 -0.1
412,943 + PGA1_c04260 0.39 -1.1
412,961 - PGA1_c04260 0.40 -0.4
413,024 + PGA1_c04260 0.46 -0.6
413,032 - PGA1_c04260 0.47 -0.9
413,116 - PGA1_c04260 0.54 -0.4
413,118 + PGA1_c04260 0.55 -0.8
413,126 - PGA1_c04260 0.55 +0.5
413,133 - PGA1_c04260 0.56 -0.4
413,144 - PGA1_c04260 0.57 +0.3
413,240 - PGA1_c04260 0.66 -0.5
413,284 + PGA1_c04260 0.70 +0.9
413,284 + PGA1_c04260 0.70 +1.0
413,292 - PGA1_c04260 0.70 +1.7
413,292 - PGA1_c04260 0.70 +0.2
413,292 - PGA1_c04260 0.70 +0.9
413,294 + PGA1_c04260 0.70 -1.5
413,302 - PGA1_c04260 0.71 +0.9
413,303 + PGA1_c04260 0.71 +0.3
413,311 - PGA1_c04260 0.72 -0.6
413,324 + PGA1_c04260 0.73 -0.6
413,384 - PGA1_c04260 0.79 +0.2
413,385 - PGA1_c04260 0.79 +0.2
413,395 - PGA1_c04260 0.80 +0.7
413,407 + PGA1_c04260 0.81 -0.5
413,407 + PGA1_c04260 0.81 +0.9
413,429 + PGA1_c04260 0.83 +0.2
413,437 + PGA1_c04260 0.83 +0.4
413,460 + PGA1_c04260 0.85 -0.3
413,486 + PGA1_c04260 0.88 -0.1
413,507 + PGA1_c04260 0.90 -0.6
413,507 + PGA1_c04260 0.90 -1.4
413,507 + PGA1_c04260 0.90 +0.9

Or see this region's nucleotide sequence