Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00280

Experiment: m.b. copper (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00270 and PGA1_65p00280 are separated by 267 nucleotidesPGA1_65p00280 and PGA1_65p00290 are separated by 22 nucleotides PGA1_65p00270: PGA1_65p00270 - Hemolysin-type calcium-binding repeat (2 copies)., at 34,095 to 36,314 _65p00270 PGA1_65p00280: PGA1_65p00280 - Protein of unknown function (DUF2793)./Domain of unknown function (DUF3476)., at 36,582 to 37,838 _65p00280 PGA1_65p00290: PGA1_65p00290 - algA: alginate biosynthesis protein, at 37,861 to 39,282 _65p00290 Position (kb) 36 37 38Strain fitness (log2 ratio) -1 0 1 2at 35.629 kb on - strand, within PGA1_65p00270at 35.647 kb on - strand, within PGA1_65p00270at 36.199 kb on + strandat 36.518 kb on + strandat 36.518 kb on + strandat 36.526 kb on - strandat 36.547 kb on + strandat 37.231 kb on + strand, within PGA1_65p00280at 37.351 kb on + strand, within PGA1_65p00280at 37.359 kb on - strand, within PGA1_65p00280at 37.399 kb on - strand, within PGA1_65p00280at 37.650 kb on - strand, within PGA1_65p00280at 37.839 kb on + strandat 37.981 kb on + strandat 38.488 kb on + strand, within PGA1_65p00290at 38.629 kb on + strand, within PGA1_65p00290

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.3 mM
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35,629 - PGA1_65p00270 0.69 +0.6
35,647 - PGA1_65p00270 0.70 +1.4
36,199 + -0.1
36,518 + +0.4
36,518 + +0.1
36,526 - -1.0
36,547 + +0.1
37,231 + PGA1_65p00280 0.52 +0.4
37,351 + PGA1_65p00280 0.61 +0.9
37,359 - PGA1_65p00280 0.62 +0.8
37,399 - PGA1_65p00280 0.65 +0.9
37,650 - PGA1_65p00280 0.85 +0.8
37,839 + -0.6
37,981 + +2.5
38,488 + PGA1_65p00290 0.44 -0.2
38,629 + PGA1_65p00290 0.54 +1.6

Or see this region's nucleotide sequence