Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01410

Experiment: m.b. copper (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01400 and PGA1_262p01410 are separated by 91 nucleotidesPGA1_262p01410 and PGA1_262p01420 are separated by 631 nucleotides PGA1_262p01400: PGA1_262p01400 - dimethylglycine dehydrogenase DmgdH, at 150,455 to 152,875 _262p01400 PGA1_262p01410: PGA1_262p01410 - malate/L-lactate dehydrogenase-like protein, at 152,967 to 153,404 _262p01410 PGA1_262p01420: PGA1_262p01420 - Protein of unknown function (DUF3726)., at 154,036 to 154,686 _262p01420 Position (kb) 152 153 154Strain fitness (log2 ratio) -1 0 1at 151.986 kb on - strand, within PGA1_262p01400at 152.006 kb on - strand, within PGA1_262p01400at 152.418 kb on - strand, within PGA1_262p01400at 152.423 kb on + strand, within PGA1_262p01400at 152.446 kb on - strand, within PGA1_262p01400at 152.749 kb on - strandat 152.792 kb on - strandat 152.792 kb on - strandat 152.856 kb on + strandat 153.193 kb on + strand, within PGA1_262p01410at 153.201 kb on - strand, within PGA1_262p01410at 153.342 kb on - strand, within PGA1_262p01410at 153.367 kb on - strandat 153.369 kb on - strandat 153.648 kb on - strandat 153.691 kb on - strandat 153.749 kb on - strandat 153.749 kb on - strandat 153.949 kb on + strandat 154.006 kb on - strandat 154.110 kb on + strand, within PGA1_262p01420

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.3 mM
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151,986 - PGA1_262p01400 0.63 +1.1
152,006 - PGA1_262p01400 0.64 -0.5
152,418 - PGA1_262p01400 0.81 -0.1
152,423 + PGA1_262p01400 0.81 +1.4
152,446 - PGA1_262p01400 0.82 +1.4
152,749 - +0.4
152,792 - -0.5
152,792 - -1.3
152,856 + +0.8
153,193 + PGA1_262p01410 0.52 +0.4
153,201 - PGA1_262p01410 0.53 +0.2
153,342 - PGA1_262p01410 0.86 +0.9
153,367 - -0.7
153,369 - +0.5
153,648 - +1.1
153,691 - -0.1
153,749 - -0.3
153,749 - +0.9
153,949 + +1.1
154,006 - +0.7
154,110 + PGA1_262p01420 0.11 +0.1

Or see this region's nucleotide sequence