Strain Fitness in Marinobacter adhaerens HP15 around HP15_3624

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3621 and HP15_3622 are separated by 77 nucleotidesHP15_3622 and HP15_3623 overlap by 14 nucleotidesHP15_3623 and HP15_3624 are separated by 68 nucleotidesHP15_3624 and HP15_3625 are separated by 210 nucleotides HP15_3621: HP15_3621 - antioxidant, AhpC/Tsa family protein, at 3,817,954 to 3,818,430 _3621 HP15_3622: HP15_3622 - peroxiredoxin, at 3,818,508 to 3,819,071 _3622 HP15_3623: HP15_3623 - hypothetical protein, at 3,819,058 to 3,819,165 _3623 HP15_3624: HP15_3624 - transporter, BCCT family protein, at 3,819,234 to 3,820,451 _3624 HP15_3625: HP15_3625 - choline dehydrogenase, at 3,820,662 to 3,822,347 _3625 Position (kb) 3819 3820 3821Strain fitness (log2 ratio) -2 -1 0 1 2at 3818.328 kb on + strand, within HP15_3621at 3818.328 kb on + strand, within HP15_3621at 3818.375 kb on - strand, within HP15_3621at 3818.506 kb on + strandat 3818.506 kb on + strandat 3818.506 kb on + strandat 3818.514 kb on - strandat 3818.533 kb on - strandat 3818.678 kb on + strand, within HP15_3622at 3818.678 kb on + strand, within HP15_3622at 3818.678 kb on + strand, within HP15_3622at 3818.686 kb on - strand, within HP15_3622at 3818.723 kb on + strand, within HP15_3622at 3818.724 kb on + strand, within HP15_3622at 3818.980 kb on + strand, within HP15_3622at 3818.995 kb on + strand, within HP15_3622at 3819.003 kb on - strand, within HP15_3622at 3819.101 kb on + strand, within HP15_3623at 3819.231 kb on + strandat 3819.239 kb on - strandat 3819.239 kb on - strandat 3819.239 kb on - strandat 3819.339 kb on + strandat 3819.360 kb on - strand, within HP15_3624at 3819.416 kb on - strand, within HP15_3624at 3819.440 kb on + strand, within HP15_3624at 3819.462 kb on + strand, within HP15_3624at 3819.484 kb on - strand, within HP15_3624at 3819.490 kb on + strand, within HP15_3624at 3819.519 kb on + strand, within HP15_3624at 3819.584 kb on - strand, within HP15_3624at 3819.648 kb on - strand, within HP15_3624at 3819.717 kb on + strand, within HP15_3624at 3819.747 kb on - strand, within HP15_3624at 3819.747 kb on - strand, within HP15_3624at 3819.809 kb on + strand, within HP15_3624at 3819.840 kb on + strand, within HP15_3624at 3819.901 kb on + strand, within HP15_3624at 3819.901 kb on + strand, within HP15_3624at 3819.907 kb on - strand, within HP15_3624at 3820.095 kb on + strand, within HP15_3624at 3820.139 kb on + strand, within HP15_3624at 3820.233 kb on + strand, within HP15_3624at 3820.233 kb on + strand, within HP15_3624at 3820.241 kb on - strand, within HP15_3624at 3820.288 kb on + strand, within HP15_3624at 3820.310 kb on + strand, within HP15_3624at 3820.312 kb on - strand, within HP15_3624at 3820.313 kb on - strand, within HP15_3624at 3820.318 kb on - strand, within HP15_3624at 3820.371 kb on - strandat 3820.422 kb on + strandat 3820.422 kb on + strandat 3820.487 kb on - strandat 3820.489 kb on + strandat 3820.495 kb on - strandat 3820.497 kb on - strandat 3820.501 kb on + strandat 3820.552 kb on - strandat 3820.657 kb on - strandat 3820.669 kb on + strandat 3820.672 kb on - strandat 3820.675 kb on + strandat 3820.717 kb on + strandat 3820.764 kb on + strandat 3820.798 kb on - strandat 3820.855 kb on - strand, within HP15_3625at 3820.878 kb on - strand, within HP15_3625at 3821.028 kb on + strand, within HP15_3625at 3821.077 kb on - strand, within HP15_3625at 3821.160 kb on - strand, within HP15_3625at 3821.237 kb on - strand, within HP15_3625at 3821.318 kb on - strand, within HP15_3625at 3821.318 kb on - strand, within HP15_3625at 3821.323 kb on + strand, within HP15_3625at 3821.390 kb on + strand, within HP15_3625at 3821.405 kb on + strand, within HP15_3625

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
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3,818,328 + HP15_3621 0.78 -0.2
3,818,328 + HP15_3621 0.78 -0.6
3,818,375 - HP15_3621 0.88 +0.5
3,818,506 + -0.7
3,818,506 + +0.0
3,818,506 + +1.6
3,818,514 - +0.8
3,818,533 - +0.2
3,818,678 + HP15_3622 0.30 +0.1
3,818,678 + HP15_3622 0.30 -1.8
3,818,678 + HP15_3622 0.30 -0.2
3,818,686 - HP15_3622 0.32 -1.5
3,818,723 + HP15_3622 0.38 -0.5
3,818,724 + HP15_3622 0.38 -1.0
3,818,980 + HP15_3622 0.84 -1.5
3,818,995 + HP15_3622 0.86 -2.1
3,819,003 - HP15_3622 0.88 -0.6
3,819,101 + HP15_3623 0.40 -1.0
3,819,231 + +0.9
3,819,239 - -0.2
3,819,239 - +0.9
3,819,239 - +0.5
3,819,339 + +1.1
3,819,360 - HP15_3624 0.10 +0.5
3,819,416 - HP15_3624 0.15 +0.3
3,819,440 + HP15_3624 0.17 -1.2
3,819,462 + HP15_3624 0.19 +0.2
3,819,484 - HP15_3624 0.21 +0.8
3,819,490 + HP15_3624 0.21 +0.5
3,819,519 + HP15_3624 0.23 +1.5
3,819,584 - HP15_3624 0.29 +0.9
3,819,648 - HP15_3624 0.34 -0.0
3,819,717 + HP15_3624 0.40 +1.8
3,819,747 - HP15_3624 0.42 +0.4
3,819,747 - HP15_3624 0.42 +0.8
3,819,809 + HP15_3624 0.47 +1.0
3,819,840 + HP15_3624 0.50 +0.0
3,819,901 + HP15_3624 0.55 -1.5
3,819,901 + HP15_3624 0.55 +1.3
3,819,907 - HP15_3624 0.55 +1.2
3,820,095 + HP15_3624 0.71 -0.2
3,820,139 + HP15_3624 0.74 +1.3
3,820,233 + HP15_3624 0.82 +2.0
3,820,233 + HP15_3624 0.82 +0.5
3,820,241 - HP15_3624 0.83 +0.5
3,820,288 + HP15_3624 0.87 +2.2
3,820,310 + HP15_3624 0.88 +2.1
3,820,312 - HP15_3624 0.89 +1.6
3,820,313 - HP15_3624 0.89 +0.5
3,820,318 - HP15_3624 0.89 +0.4
3,820,371 - +2.1
3,820,422 + +0.7
3,820,422 + +0.1
3,820,487 - +0.3
3,820,489 + -1.8
3,820,495 - +0.5
3,820,497 - +2.3
3,820,501 + +0.4
3,820,552 - -0.6
3,820,657 - -1.9
3,820,669 + +0.5
3,820,672 - -1.7
3,820,675 + -0.2
3,820,717 + +0.2
3,820,764 + +0.8
3,820,798 - -1.2
3,820,855 - HP15_3625 0.11 -1.6
3,820,878 - HP15_3625 0.13 -0.6
3,821,028 + HP15_3625 0.22 +1.5
3,821,077 - HP15_3625 0.25 +0.6
3,821,160 - HP15_3625 0.30 +0.1
3,821,237 - HP15_3625 0.34 -0.4
3,821,318 - HP15_3625 0.39 +0.4
3,821,318 - HP15_3625 0.39 +0.5
3,821,323 + HP15_3625 0.39 -0.1
3,821,390 + HP15_3625 0.43 +0.8
3,821,405 + HP15_3625 0.44 +1.2

Or see this region's nucleotide sequence