Experiment: m.b. copper (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00150 and PGA1_262p00160 are separated by 95 nucleotides PGA1_262p00160 and PGA1_262p00170 overlap by 4 nucleotides PGA1_262p00170 and PGA1_262p00180 are separated by 88 nucleotides
PGA1_262p00150: PGA1_262p00150 - methyl-accepting chemotaxis protein, at 17,990 to 20,662
_262p00150
PGA1_262p00160: PGA1_262p00160 - Branched-chain amino acid transport protein (AzlD)., at 20,758 to 21,057
_262p00160
PGA1_262p00170: PGA1_262p00170 - Predicted branched-chain amino acid permease (azaleucine resistance), at 21,054 to 21,770
_262p00170
PGA1_262p00180: PGA1_262p00180 - transcriptional regulator, AsnC family, at 21,859 to 22,332
_262p00180
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.769 kb on - strand, within PGA1_262p00150 at 19.772 kb on - strand, within PGA1_262p00150 at 19.774 kb on - strand, within PGA1_262p00150 at 19.796 kb on + strand, within PGA1_262p00150 at 19.802 kb on + strand, within PGA1_262p00150 at 19.817 kb on - strand, within PGA1_262p00150 at 19.870 kb on - strand, within PGA1_262p00150 at 20.035 kb on + strand, within PGA1_262p00150 at 20.140 kb on + strand, within PGA1_262p00150 at 20.329 kb on + strand, within PGA1_262p00150 at 20.329 kb on + strand, within PGA1_262p00150 at 20.337 kb on - strand, within PGA1_262p00150 at 20.416 kb on + strand at 20.416 kb on + strand at 20.416 kb on + strand at 20.416 kb on + strand at 20.418 kb on + strand at 20.424 kb on - strand at 20.424 kb on - strand at 20.424 kb on - strand at 20.426 kb on - strand at 20.426 kb on - strand at 20.426 kb on - strand at 20.511 kb on + strand at 20.511 kb on + strand at 20.519 kb on - strand at 20.519 kb on - strand at 20.519 kb on - strand at 20.771 kb on + strand at 20.846 kb on - strand, within PGA1_262p00160 at 20.950 kb on + strand, within PGA1_262p00160 at 21.010 kb on + strand, within PGA1_262p00160 at 21.010 kb on + strand, within PGA1_262p00160 at 21.010 kb on + strand, within PGA1_262p00160 at 21.010 kb on + strand, within PGA1_262p00160 at 21.025 kb on + strand, within PGA1_262p00160 at 21.025 kb on + strand, within PGA1_262p00160 at 21.033 kb on - strand at 21.033 kb on - strand at 21.068 kb on - strand at 21.126 kb on + strand, within PGA1_262p00170 at 21.218 kb on + strand, within PGA1_262p00170 at 21.220 kb on + strand, within PGA1_262p00170 at 21.228 kb on - strand, within PGA1_262p00170 at 21.278 kb on - strand, within PGA1_262p00170 at 21.314 kb on - strand, within PGA1_262p00170 at 21.356 kb on - strand, within PGA1_262p00170 at 21.356 kb on - strand, within PGA1_262p00170 at 21.378 kb on - strand, within PGA1_262p00170 at 21.413 kb on - strand, within PGA1_262p00170 at 21.420 kb on - strand, within PGA1_262p00170 at 21.531 kb on + strand, within PGA1_262p00170 at 21.546 kb on + strand, within PGA1_262p00170 at 21.687 kb on - strand, within PGA1_262p00170 at 21.786 kb on + strand at 21.914 kb on - strand, within PGA1_262p00180 at 21.914 kb on - strand, within PGA1_262p00180 at 21.939 kb on - strand, within PGA1_262p00180 at 21.968 kb on - strand, within PGA1_262p00180 at 21.981 kb on - strand, within PGA1_262p00180 at 21.981 kb on - strand, within PGA1_262p00180 at 22.001 kb on + strand, within PGA1_262p00180 at 22.036 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.3 mM remove 19,769 - PGA1_262p00150 0.67 -0.7 19,772 - PGA1_262p00150 0.67 -1.2 19,774 - PGA1_262p00150 0.67 -0.6 19,796 + PGA1_262p00150 0.68 +0.0 19,802 + PGA1_262p00150 0.68 +0.8 19,817 - PGA1_262p00150 0.68 +1.7 19,870 - PGA1_262p00150 0.70 +0.5 20,035 + PGA1_262p00150 0.77 -0.6 20,140 + PGA1_262p00150 0.80 +1.3 20,329 + PGA1_262p00150 0.88 -1.2 20,329 + PGA1_262p00150 0.88 -1.3 20,337 - PGA1_262p00150 0.88 -0.3 20,416 + +0.3 20,416 + -0.3 20,416 + +0.1 20,416 + -0.5 20,418 + -1.5 20,424 - -0.3 20,424 - -1.7 20,424 - +0.5 20,426 - -0.2 20,426 - +0.1 20,426 - +0.6 20,511 + -0.0 20,511 + -0.6 20,519 - +0.3 20,519 - -0.1 20,519 - +0.4 20,771 + +1.3 20,846 - PGA1_262p00160 0.29 +0.7 20,950 + PGA1_262p00160 0.64 -2.2 21,010 + PGA1_262p00160 0.84 -3.7 21,010 + PGA1_262p00160 0.84 -2.2 21,010 + PGA1_262p00160 0.84 -0.0 21,010 + PGA1_262p00160 0.84 +0.9 21,025 + PGA1_262p00160 0.89 +2.3 21,025 + PGA1_262p00160 0.89 +0.7 21,033 - +0.6 21,033 - -0.4 21,068 - -0.2 21,126 + PGA1_262p00170 0.10 -0.4 21,218 + PGA1_262p00170 0.23 +0.5 21,220 + PGA1_262p00170 0.23 -0.2 21,228 - PGA1_262p00170 0.24 -2.5 21,278 - PGA1_262p00170 0.31 +0.1 21,314 - PGA1_262p00170 0.36 -0.2 21,356 - PGA1_262p00170 0.42 +0.5 21,356 - PGA1_262p00170 0.42 +2.2 21,378 - PGA1_262p00170 0.45 -1.3 21,413 - PGA1_262p00170 0.50 +0.4 21,420 - PGA1_262p00170 0.51 -0.6 21,531 + PGA1_262p00170 0.67 +1.0 21,546 + PGA1_262p00170 0.69 -0.6 21,687 - PGA1_262p00170 0.88 -1.2 21,786 + +1.6 21,914 - PGA1_262p00180 0.12 -0.8 21,914 - PGA1_262p00180 0.12 +0.3 21,939 - PGA1_262p00180 0.17 +1.7 21,968 - PGA1_262p00180 0.23 +0.8 21,981 - PGA1_262p00180 0.26 -1.1 21,981 - PGA1_262p00180 0.26 -0.6 22,001 + PGA1_262p00180 0.30 +1.1 22,036 + PGA1_262p00180 0.37 -0.1 22,052 + PGA1_262p00180 0.41 +1.3 22,052 + PGA1_262p00180 0.41 -0.2 22,052 + PGA1_262p00180 0.41 -0.5 22,052 + PGA1_262p00180 0.41 -0.8 22,052 + PGA1_262p00180 0.41 -1.3
Or see this region's nucleotide sequence