Strain Fitness in Marinobacter adhaerens HP15 around HP15_3529

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3528 and HP15_3529 are separated by 49 nucleotidesHP15_3529 and HP15_3530 are separated by 24 nucleotidesHP15_3530 and HP15_3531 are separated by 23 nucleotides HP15_3528: HP15_3528 - mesoderm specific transcript isoform b isoform-like protein, at 3,715,550 to 3,716,617 _3528 HP15_3529: HP15_3529 - GTP cyclohydrolase 1, at 3,716,667 to 3,717,236 _3529 HP15_3530: HP15_3530 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase, at 3,717,261 to 3,717,635 _3530 HP15_3531: HP15_3531 - hypothetical protein, at 3,717,659 to 3,718,096 _3531 Position (kb) 3716 3717 3718Strain fitness (log2 ratio) -3 -2 -1 0 1at 3715.743 kb on + strand, within HP15_3528at 3715.751 kb on - strand, within HP15_3528at 3715.781 kb on + strand, within HP15_3528at 3715.839 kb on + strand, within HP15_3528at 3715.931 kb on + strand, within HP15_3528at 3715.939 kb on - strand, within HP15_3528at 3716.122 kb on + strand, within HP15_3528at 3716.140 kb on - strand, within HP15_3528at 3716.146 kb on + strand, within HP15_3528at 3716.159 kb on - strand, within HP15_3528at 3716.162 kb on + strand, within HP15_3528at 3716.217 kb on - strand, within HP15_3528at 3716.404 kb on + strand, within HP15_3528at 3716.404 kb on + strand, within HP15_3528at 3716.404 kb on + strand, within HP15_3528at 3716.410 kb on - strand, within HP15_3528at 3716.412 kb on - strand, within HP15_3528at 3716.412 kb on - strand, within HP15_3528at 3716.412 kb on - strand, within HP15_3528at 3716.412 kb on - strand, within HP15_3528at 3716.459 kb on + strand, within HP15_3528at 3716.484 kb on - strand, within HP15_3528at 3716.528 kb on + strandat 3716.534 kb on + strandat 3716.599 kb on + strandat 3716.638 kb on + strandat 3716.748 kb on + strand, within HP15_3529at 3716.778 kb on + strand, within HP15_3529at 3716.784 kb on - strand, within HP15_3529at 3716.961 kb on + strand, within HP15_3529at 3716.961 kb on + strand, within HP15_3529at 3716.969 kb on - strand, within HP15_3529at 3716.969 kb on - strand, within HP15_3529at 3716.980 kb on - strand, within HP15_3529at 3717.051 kb on + strand, within HP15_3529at 3717.099 kb on + strand, within HP15_3529at 3717.240 kb on + strandat 3717.384 kb on - strand, within HP15_3530at 3717.386 kb on + strand, within HP15_3530at 3717.405 kb on + strand, within HP15_3530at 3717.406 kb on + strand, within HP15_3530at 3717.432 kb on + strand, within HP15_3530at 3717.487 kb on + strand, within HP15_3530at 3717.503 kb on - strand, within HP15_3530at 3717.505 kb on - strand, within HP15_3530at 3717.512 kb on - strand, within HP15_3530at 3717.518 kb on - strand, within HP15_3530at 3717.519 kb on + strand, within HP15_3530at 3717.519 kb on + strand, within HP15_3530at 3717.519 kb on + strand, within HP15_3530at 3717.519 kb on + strand, within HP15_3530at 3717.519 kb on + strand, within HP15_3530at 3717.527 kb on - strand, within HP15_3530at 3717.527 kb on - strand, within HP15_3530at 3717.527 kb on - strand, within HP15_3530at 3717.527 kb on - strand, within HP15_3530at 3717.563 kb on + strand, within HP15_3530at 3717.663 kb on - strandat 3717.866 kb on - strand, within HP15_3531at 3718.011 kb on + strand, within HP15_3531at 3718.098 kb on - strandat 3718.100 kb on - strandat 3718.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
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3,715,743 + HP15_3528 0.18 -0.1
3,715,751 - HP15_3528 0.19 +0.6
3,715,781 + HP15_3528 0.22 +0.2
3,715,839 + HP15_3528 0.27 -0.8
3,715,931 + HP15_3528 0.36 -1.3
3,715,939 - HP15_3528 0.36 +1.0
3,716,122 + HP15_3528 0.54 -0.3
3,716,140 - HP15_3528 0.55 -0.3
3,716,146 + HP15_3528 0.56 -0.6
3,716,159 - HP15_3528 0.57 +0.0
3,716,162 + HP15_3528 0.57 -0.1
3,716,217 - HP15_3528 0.62 +0.0
3,716,404 + HP15_3528 0.80 +0.1
3,716,404 + HP15_3528 0.80 +0.5
3,716,404 + HP15_3528 0.80 -0.3
3,716,410 - HP15_3528 0.81 +1.5
3,716,412 - HP15_3528 0.81 -0.2
3,716,412 - HP15_3528 0.81 -0.3
3,716,412 - HP15_3528 0.81 -0.4
3,716,412 - HP15_3528 0.81 +0.5
3,716,459 + HP15_3528 0.85 +1.7
3,716,484 - HP15_3528 0.87 -0.5
3,716,528 + -0.9
3,716,534 + -1.0
3,716,599 + -0.1
3,716,638 + -1.5
3,716,748 + HP15_3529 0.14 -3.1
3,716,778 + HP15_3529 0.19 -2.3
3,716,784 - HP15_3529 0.21 -3.0
3,716,961 + HP15_3529 0.52 -2.3
3,716,961 + HP15_3529 0.52 -2.5
3,716,969 - HP15_3529 0.53 -2.2
3,716,969 - HP15_3529 0.53 -2.0
3,716,980 - HP15_3529 0.55 -2.9
3,717,051 + HP15_3529 0.67 -2.9
3,717,099 + HP15_3529 0.76 -3.6
3,717,240 + -0.7
3,717,384 - HP15_3530 0.33 +0.3
3,717,386 + HP15_3530 0.33 -0.4
3,717,405 + HP15_3530 0.38 -0.3
3,717,406 + HP15_3530 0.39 +0.5
3,717,432 + HP15_3530 0.46 +0.3
3,717,487 + HP15_3530 0.60 -0.5
3,717,503 - HP15_3530 0.65 -0.1
3,717,505 - HP15_3530 0.65 -0.3
3,717,512 - HP15_3530 0.67 -0.2
3,717,518 - HP15_3530 0.69 -0.3
3,717,519 + HP15_3530 0.69 -0.3
3,717,519 + HP15_3530 0.69 -0.4
3,717,519 + HP15_3530 0.69 +0.6
3,717,519 + HP15_3530 0.69 +1.1
3,717,519 + HP15_3530 0.69 -0.1
3,717,527 - HP15_3530 0.71 +0.1
3,717,527 - HP15_3530 0.71 -0.8
3,717,527 - HP15_3530 0.71 -0.3
3,717,527 - HP15_3530 0.71 +0.3
3,717,563 + HP15_3530 0.81 +0.5
3,717,663 - -0.2
3,717,866 - HP15_3531 0.47 +0.2
3,718,011 + HP15_3531 0.80 -0.3
3,718,098 - +1.0
3,718,100 - -0.2
3,718,105 - +0.0

Or see this region's nucleotide sequence