Strain Fitness in Marinobacter adhaerens HP15 around HP15_3059

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3057 and HP15_3058 are separated by 6 nucleotidesHP15_3058 and HP15_3059 are separated by 9 nucleotidesHP15_3059 and HP15_3060 are separated by 238 nucleotidesHP15_3060 and HP15_3061 are separated by 74 nucleotides HP15_3057: HP15_3057 - leucine/isoleucine/valine transporter permease subunit, at 3,207,965 to 3,209,236 _3057 HP15_3058: HP15_3058 - leucine/isoleucine/valine transporter ATP-binding subunit, at 3,209,243 to 3,209,998 _3058 HP15_3059: HP15_3059 - high-affinity branched-chain amino acid ABC transporter, ATP-binding protein, at 3,210,008 to 3,210,709 _3059 HP15_3060: HP15_3060 - conserved hypothetical protein, secreted, at 3,210,948 to 3,211,412 _3060 HP15_3061: HP15_3061 - conserved hypothetical protein, secreted, at 3,211,487 to 3,213,367 _3061 Position (kb) 3210 3211Strain fitness (log2 ratio) -1 0 1 2 3at 3209.016 kb on - strand, within HP15_3057at 3209.148 kb on - strandat 3209.178 kb on - strandat 3209.178 kb on - strandat 3209.484 kb on + strand, within HP15_3058at 3209.631 kb on - strand, within HP15_3058at 3209.649 kb on + strand, within HP15_3058at 3209.649 kb on + strand, within HP15_3058at 3209.719 kb on - strand, within HP15_3058at 3209.868 kb on + strand, within HP15_3058at 3209.868 kb on + strand, within HP15_3058at 3209.992 kb on + strandat 3210.000 kb on - strandat 3210.007 kb on - strandat 3210.025 kb on + strandat 3210.053 kb on + strandat 3210.136 kb on + strand, within HP15_3059at 3210.218 kb on + strand, within HP15_3059at 3210.266 kb on - strand, within HP15_3059at 3210.380 kb on - strand, within HP15_3059at 3210.459 kb on + strand, within HP15_3059at 3210.820 kb on - strandat 3210.824 kb on + strandat 3211.059 kb on - strand, within HP15_3060at 3211.165 kb on - strand, within HP15_3060at 3211.165 kb on - strand, within HP15_3060at 3211.205 kb on - strand, within HP15_3060at 3211.245 kb on - strand, within HP15_3060at 3211.245 kb on - strand, within HP15_3060at 3211.419 kb on - strandat 3211.419 kb on - strandat 3211.483 kb on - strandat 3211.529 kb on + strandat 3211.537 kb on - strandat 3211.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
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3,209,016 - HP15_3057 0.83 +1.0
3,209,148 - +0.6
3,209,178 - +0.3
3,209,178 - +0.0
3,209,484 + HP15_3058 0.32 +1.5
3,209,631 - HP15_3058 0.51 +1.6
3,209,649 + HP15_3058 0.54 +0.8
3,209,649 + HP15_3058 0.54 +1.8
3,209,719 - HP15_3058 0.63 +0.8
3,209,868 + HP15_3058 0.83 +1.4
3,209,868 + HP15_3058 0.83 +1.4
3,209,992 + +0.4
3,210,000 - +0.5
3,210,007 - +0.7
3,210,025 + +0.8
3,210,053 + +1.8
3,210,136 + HP15_3059 0.18 +0.4
3,210,218 + HP15_3059 0.30 +3.3
3,210,266 - HP15_3059 0.37 +1.9
3,210,380 - HP15_3059 0.53 +0.0
3,210,459 + HP15_3059 0.64 -0.2
3,210,820 - +0.6
3,210,824 + +0.2
3,211,059 - HP15_3060 0.24 +0.1
3,211,165 - HP15_3060 0.47 +1.1
3,211,165 - HP15_3060 0.47 -0.3
3,211,205 - HP15_3060 0.55 -0.2
3,211,245 - HP15_3060 0.64 +0.6
3,211,245 - HP15_3060 0.64 +0.0
3,211,419 - -0.4
3,211,419 - +0.6
3,211,483 - +0.4
3,211,529 + +0.4
3,211,537 - +0.6
3,211,542 - +1.5

Or see this region's nucleotide sequence