Experiment: m.b. Thallium(I) acetate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2955 and HP15_2956 are separated by 18 nucleotides HP15_2956 and HP15_2957 overlap by 8 nucleotides HP15_2957 and HP15_2958 are separated by 54 nucleotides
HP15_2955: HP15_2955 - ATP-binding component of ABC transporter, at 3,098,647 to 3,099,765
_2955
HP15_2956: HP15_2956 - sugar ABC transporter, permease protein, at 3,099,784 to 3,100,653
_2956
HP15_2957: HP15_2957 - sugar ABC transporter, permease protein, at 3,100,646 to 3,101,572
_2957
HP15_2958: HP15_2958 - extracellular solute-binding protein family 1, at 3,101,627 to 3,102,877
_2958
Position (kb)
3100
3101
3102 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3099.698 kb on + strand at 3099.699 kb on + strand at 3099.795 kb on - strand at 3099.839 kb on + strand at 3099.847 kb on - strand at 3099.868 kb on + strand at 3099.900 kb on + strand, within HP15_2956 at 3099.931 kb on + strand, within HP15_2956 at 3099.952 kb on - strand, within HP15_2956 at 3100.039 kb on - strand, within HP15_2956 at 3100.106 kb on + strand, within HP15_2956 at 3100.114 kb on - strand, within HP15_2956 at 3100.114 kb on - strand, within HP15_2956 at 3100.160 kb on + strand, within HP15_2956 at 3100.249 kb on + strand, within HP15_2956 at 3100.305 kb on + strand, within HP15_2956 at 3100.335 kb on + strand, within HP15_2956 at 3100.343 kb on - strand, within HP15_2956 at 3100.343 kb on - strand, within HP15_2956 at 3100.352 kb on + strand, within HP15_2956 at 3100.499 kb on + strand, within HP15_2956 at 3100.736 kb on + strand at 3100.736 kb on + strand at 3100.736 kb on + strand at 3100.756 kb on + strand, within HP15_2957 at 3100.837 kb on + strand, within HP15_2957 at 3100.845 kb on - strand, within HP15_2957 at 3100.938 kb on - strand, within HP15_2957 at 3100.975 kb on + strand, within HP15_2957 at 3100.975 kb on + strand, within HP15_2957 at 3101.051 kb on + strand, within HP15_2957 at 3101.073 kb on - strand, within HP15_2957 at 3101.131 kb on + strand, within HP15_2957 at 3101.166 kb on + strand, within HP15_2957 at 3101.166 kb on + strand, within HP15_2957 at 3101.178 kb on + strand, within HP15_2957 at 3101.188 kb on + strand, within HP15_2957 at 3101.211 kb on - strand, within HP15_2957 at 3101.334 kb on - strand, within HP15_2957 at 3101.365 kb on + strand, within HP15_2957 at 3101.427 kb on + strand, within HP15_2957 at 3101.464 kb on + strand, within HP15_2957 at 3101.590 kb on + strand at 3101.731 kb on + strand at 3101.734 kb on - strand at 3101.747 kb on + strand at 3101.803 kb on - strand, within HP15_2958 at 3101.818 kb on + strand, within HP15_2958 at 3101.829 kb on + strand, within HP15_2958 at 3101.880 kb on + strand, within HP15_2958 at 3101.880 kb on + strand, within HP15_2958 at 3101.888 kb on - strand, within HP15_2958 at 3101.944 kb on - strand, within HP15_2958 at 3101.976 kb on - strand, within HP15_2958 at 3102.025 kb on - strand, within HP15_2958 at 3102.025 kb on - strand, within HP15_2958 at 3102.060 kb on + strand, within HP15_2958 at 3102.060 kb on + strand, within HP15_2958 at 3102.068 kb on - strand, within HP15_2958 at 3102.075 kb on + strand, within HP15_2958 at 3102.083 kb on - strand, within HP15_2958 at 3102.083 kb on - strand, within HP15_2958 at 3102.083 kb on - strand, within HP15_2958 at 3102.200 kb on - strand, within HP15_2958 at 3102.207 kb on + strand, within HP15_2958 at 3102.225 kb on - strand, within HP15_2958 at 3102.326 kb on - strand, within HP15_2958 at 3102.326 kb on - strand, within HP15_2958 at 3102.345 kb on + strand, within HP15_2958 at 3102.384 kb on + strand, within HP15_2958 at 3102.384 kb on + strand, within HP15_2958 at 3102.392 kb on - strand, within HP15_2958 at 3102.402 kb on - strand, within HP15_2958 at 3102.402 kb on - strand, within HP15_2958 at 3102.464 kb on - strand, within HP15_2958 at 3102.471 kb on + strand, within HP15_2958
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml remove 3,099,698 + +0.6 3,099,699 + -0.0 3,099,795 - +1.0 3,099,839 + +0.2 3,099,847 - -0.1 3,099,868 + +0.1 3,099,900 + HP15_2956 0.13 -0.1 3,099,931 + HP15_2956 0.17 -0.3 3,099,952 - HP15_2956 0.19 +0.5 3,100,039 - HP15_2956 0.29 +0.4 3,100,106 + HP15_2956 0.37 -0.8 3,100,114 - HP15_2956 0.38 -0.5 3,100,114 - HP15_2956 0.38 +1.1 3,100,160 + HP15_2956 0.43 +1.9 3,100,249 + HP15_2956 0.53 -0.1 3,100,305 + HP15_2956 0.60 -1.1 3,100,335 + HP15_2956 0.63 -0.9 3,100,343 - HP15_2956 0.64 -0.1 3,100,343 - HP15_2956 0.64 +0.0 3,100,352 + HP15_2956 0.65 -0.1 3,100,499 + HP15_2956 0.82 -0.0 3,100,736 + -0.8 3,100,736 + -0.6 3,100,736 + +0.1 3,100,756 + HP15_2957 0.12 +1.5 3,100,837 + HP15_2957 0.21 +1.2 3,100,845 - HP15_2957 0.21 -0.5 3,100,938 - HP15_2957 0.31 -0.2 3,100,975 + HP15_2957 0.35 -0.2 3,100,975 + HP15_2957 0.35 +0.2 3,101,051 + HP15_2957 0.44 +1.1 3,101,073 - HP15_2957 0.46 +1.2 3,101,131 + HP15_2957 0.52 -0.5 3,101,166 + HP15_2957 0.56 -0.6 3,101,166 + HP15_2957 0.56 +0.1 3,101,178 + HP15_2957 0.57 -0.4 3,101,188 + HP15_2957 0.58 -2.0 3,101,211 - HP15_2957 0.61 +0.5 3,101,334 - HP15_2957 0.74 +1.1 3,101,365 + HP15_2957 0.78 +2.1 3,101,427 + HP15_2957 0.84 +0.2 3,101,464 + HP15_2957 0.88 +0.4 3,101,590 + -0.5 3,101,731 + +0.6 3,101,734 - -0.7 3,101,747 + -0.4 3,101,803 - HP15_2958 0.14 -0.4 3,101,818 + HP15_2958 0.15 +0.7 3,101,829 + HP15_2958 0.16 -0.3 3,101,880 + HP15_2958 0.20 +0.1 3,101,880 + HP15_2958 0.20 -0.5 3,101,888 - HP15_2958 0.21 -0.9 3,101,944 - HP15_2958 0.25 +0.3 3,101,976 - HP15_2958 0.28 -0.1 3,102,025 - HP15_2958 0.32 +0.1 3,102,025 - HP15_2958 0.32 -0.4 3,102,060 + HP15_2958 0.35 +0.6 3,102,060 + HP15_2958 0.35 +0.6 3,102,068 - HP15_2958 0.35 -0.2 3,102,075 + HP15_2958 0.36 +0.0 3,102,083 - HP15_2958 0.36 +0.4 3,102,083 - HP15_2958 0.36 +0.5 3,102,083 - HP15_2958 0.36 +0.2 3,102,200 - HP15_2958 0.46 +1.0 3,102,207 + HP15_2958 0.46 -0.2 3,102,225 - HP15_2958 0.48 -0.5 3,102,326 - HP15_2958 0.56 +0.5 3,102,326 - HP15_2958 0.56 -1.9 3,102,345 + HP15_2958 0.57 -0.7 3,102,384 + HP15_2958 0.61 -0.2 3,102,384 + HP15_2958 0.61 +0.2 3,102,392 - HP15_2958 0.61 +0.6 3,102,402 - HP15_2958 0.62 -0.1 3,102,402 - HP15_2958 0.62 +0.7 3,102,464 - HP15_2958 0.67 -0.2 3,102,471 + HP15_2958 0.67 -0.3
Or see this region's nucleotide sequence