Experiment: m.b. copper (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26760 and PGA1_c26765 are separated by 50 nucleotides PGA1_c26765 and PGA1_c26770 are separated by 120 nucleotides
PGA1_c26760: PGA1_c26760 - virulence factor MviN, at 2,792,284 to 2,793,840
_c26760
PGA1_c26765: PGA1_c26765 - peptidase S54-like protein, at 2,793,891 to 2,794,577
_c26765
PGA1_c26770: PGA1_c26770 - tryptophanyl-tRNA synthetase TrpS, at 2,794,698 to 2,795,726
_c26770
Position (kb)
2793
2794
2795 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2793.835 kb on + strand at 2793.841 kb on + strand at 2793.887 kb on - strand at 2793.888 kb on - strand at 2793.894 kb on + strand at 2793.929 kb on - strand at 2793.981 kb on - strand, within PGA1_c26765 at 2793.992 kb on + strand, within PGA1_c26765 at 2794.000 kb on - strand, within PGA1_c26765 at 2794.023 kb on - strand, within PGA1_c26765 at 2794.036 kb on - strand, within PGA1_c26765 at 2794.076 kb on - strand, within PGA1_c26765 at 2794.078 kb on + strand, within PGA1_c26765 at 2794.106 kb on + strand, within PGA1_c26765 at 2794.106 kb on + strand, within PGA1_c26765 at 2794.114 kb on - strand, within PGA1_c26765 at 2794.114 kb on - strand, within PGA1_c26765 at 2794.120 kb on + strand, within PGA1_c26765 at 2794.133 kb on - strand, within PGA1_c26765 at 2794.191 kb on + strand, within PGA1_c26765 at 2794.199 kb on - strand, within PGA1_c26765 at 2794.201 kb on - strand, within PGA1_c26765 at 2794.244 kb on - strand, within PGA1_c26765 at 2794.416 kb on + strand, within PGA1_c26765 at 2794.424 kb on - strand, within PGA1_c26765 at 2794.456 kb on - strand, within PGA1_c26765 at 2794.456 kb on - strand, within PGA1_c26765 at 2794.456 kb on - strand, within PGA1_c26765 at 2794.533 kb on - strand at 2794.546 kb on - strand at 2794.604 kb on + strand at 2794.604 kb on - strand at 2794.604 kb on - strand at 2794.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.3 mM remove 2,793,835 + +0.2 2,793,841 + +0.6 2,793,887 - +0.4 2,793,888 - -1.8 2,793,894 + -0.8 2,793,929 - +0.4 2,793,981 - PGA1_c26765 0.13 +0.4 2,793,992 + PGA1_c26765 0.15 +0.3 2,794,000 - PGA1_c26765 0.16 -0.5 2,794,023 - PGA1_c26765 0.19 +0.5 2,794,036 - PGA1_c26765 0.21 +0.5 2,794,076 - PGA1_c26765 0.27 +1.0 2,794,078 + PGA1_c26765 0.27 -0.6 2,794,106 + PGA1_c26765 0.31 +1.7 2,794,106 + PGA1_c26765 0.31 +0.3 2,794,114 - PGA1_c26765 0.32 -1.6 2,794,114 - PGA1_c26765 0.32 +0.7 2,794,120 + PGA1_c26765 0.33 +1.4 2,794,133 - PGA1_c26765 0.35 +0.5 2,794,191 + PGA1_c26765 0.44 +1.7 2,794,199 - PGA1_c26765 0.45 -0.3 2,794,201 - PGA1_c26765 0.45 +1.2 2,794,244 - PGA1_c26765 0.51 -0.1 2,794,416 + PGA1_c26765 0.76 +0.5 2,794,424 - PGA1_c26765 0.78 +2.1 2,794,456 - PGA1_c26765 0.82 -1.2 2,794,456 - PGA1_c26765 0.82 +0.2 2,794,456 - PGA1_c26765 0.82 +0.0 2,794,533 - -1.8 2,794,546 - +1.4 2,794,604 + +0.3 2,794,604 - +0.1 2,794,604 - +0.3 2,794,612 - -0.0
Or see this region's nucleotide sequence