Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26765

Experiment: m.b. copper (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c26760 and PGA1_c26765 are separated by 50 nucleotidesPGA1_c26765 and PGA1_c26770 are separated by 120 nucleotides PGA1_c26760: PGA1_c26760 - virulence factor MviN, at 2,792,284 to 2,793,840 _c26760 PGA1_c26765: PGA1_c26765 - peptidase S54-like protein, at 2,793,891 to 2,794,577 _c26765 PGA1_c26770: PGA1_c26770 - tryptophanyl-tRNA synthetase TrpS, at 2,794,698 to 2,795,726 _c26770 Position (kb) 2793 2794 2795Strain fitness (log2 ratio) -2 -1 0 1 2at 2793.835 kb on + strandat 2793.841 kb on + strandat 2793.887 kb on - strandat 2793.888 kb on - strandat 2793.894 kb on + strandat 2793.929 kb on - strandat 2793.981 kb on - strand, within PGA1_c26765at 2793.992 kb on + strand, within PGA1_c26765at 2794.000 kb on - strand, within PGA1_c26765at 2794.023 kb on - strand, within PGA1_c26765at 2794.036 kb on - strand, within PGA1_c26765at 2794.076 kb on - strand, within PGA1_c26765at 2794.078 kb on + strand, within PGA1_c26765at 2794.106 kb on + strand, within PGA1_c26765at 2794.106 kb on + strand, within PGA1_c26765at 2794.114 kb on - strand, within PGA1_c26765at 2794.114 kb on - strand, within PGA1_c26765at 2794.120 kb on + strand, within PGA1_c26765at 2794.133 kb on - strand, within PGA1_c26765at 2794.191 kb on + strand, within PGA1_c26765at 2794.199 kb on - strand, within PGA1_c26765at 2794.201 kb on - strand, within PGA1_c26765at 2794.244 kb on - strand, within PGA1_c26765at 2794.416 kb on + strand, within PGA1_c26765at 2794.424 kb on - strand, within PGA1_c26765at 2794.456 kb on - strand, within PGA1_c26765at 2794.456 kb on - strand, within PGA1_c26765at 2794.456 kb on - strand, within PGA1_c26765at 2794.533 kb on - strandat 2794.546 kb on - strandat 2794.604 kb on + strandat 2794.604 kb on - strandat 2794.604 kb on - strandat 2794.612 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.3 mM
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2,793,835 + +0.2
2,793,841 + +0.6
2,793,887 - +0.4
2,793,888 - -1.8
2,793,894 + -0.8
2,793,929 - +0.4
2,793,981 - PGA1_c26765 0.13 +0.4
2,793,992 + PGA1_c26765 0.15 +0.3
2,794,000 - PGA1_c26765 0.16 -0.5
2,794,023 - PGA1_c26765 0.19 +0.5
2,794,036 - PGA1_c26765 0.21 +0.5
2,794,076 - PGA1_c26765 0.27 +1.0
2,794,078 + PGA1_c26765 0.27 -0.6
2,794,106 + PGA1_c26765 0.31 +1.7
2,794,106 + PGA1_c26765 0.31 +0.3
2,794,114 - PGA1_c26765 0.32 -1.6
2,794,114 - PGA1_c26765 0.32 +0.7
2,794,120 + PGA1_c26765 0.33 +1.4
2,794,133 - PGA1_c26765 0.35 +0.5
2,794,191 + PGA1_c26765 0.44 +1.7
2,794,199 - PGA1_c26765 0.45 -0.3
2,794,201 - PGA1_c26765 0.45 +1.2
2,794,244 - PGA1_c26765 0.51 -0.1
2,794,416 + PGA1_c26765 0.76 +0.5
2,794,424 - PGA1_c26765 0.78 +2.1
2,794,456 - PGA1_c26765 0.82 -1.2
2,794,456 - PGA1_c26765 0.82 +0.2
2,794,456 - PGA1_c26765 0.82 +0.0
2,794,533 - -1.8
2,794,546 - +1.4
2,794,604 + +0.3
2,794,604 - +0.1
2,794,604 - +0.3
2,794,612 - -0.0

Or see this region's nucleotide sequence