Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24810

Experiment: m.b. copper (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24800 and PGA1_c24810 are separated by 69 nucleotidesPGA1_c24810 and PGA1_c24820 are separated by 18 nucleotides PGA1_c24800: PGA1_c24800 - putative bifunctional SAT/APS kinase, at 2,584,943 to 2,587,018 _c24800 PGA1_c24810: PGA1_c24810 - Glycosyltransferase family 10 (fucosyltransferase)., at 2,587,088 to 2,587,957 _c24810 PGA1_c24820: PGA1_c24820 - phenazine biosynthesis protein, at 2,587,976 to 2,588,857 _c24820 Position (kb) 2587 2588Strain fitness (log2 ratio) -2 -1 0 1at 2586.789 kb on + strand, within PGA1_c24800at 2586.979 kb on - strandat 2587.280 kb on - strand, within PGA1_c24810at 2587.287 kb on - strand, within PGA1_c24810at 2587.316 kb on - strand, within PGA1_c24810at 2587.326 kb on - strand, within PGA1_c24810at 2587.401 kb on - strand, within PGA1_c24810at 2587.466 kb on + strand, within PGA1_c24810at 2587.506 kb on + strand, within PGA1_c24810at 2587.523 kb on - strand, within PGA1_c24810at 2587.572 kb on - strand, within PGA1_c24810at 2587.607 kb on - strand, within PGA1_c24810at 2587.620 kb on + strand, within PGA1_c24810at 2587.654 kb on - strand, within PGA1_c24810at 2587.674 kb on + strand, within PGA1_c24810at 2587.674 kb on + strand, within PGA1_c24810at 2587.674 kb on + strand, within PGA1_c24810at 2587.677 kb on - strand, within PGA1_c24810at 2587.682 kb on - strand, within PGA1_c24810at 2587.682 kb on - strand, within PGA1_c24810at 2587.682 kb on - strand, within PGA1_c24810at 2587.744 kb on - strand, within PGA1_c24810at 2587.744 kb on - strand, within PGA1_c24810at 2587.754 kb on - strand, within PGA1_c24810at 2587.754 kb on - strand, within PGA1_c24810at 2587.754 kb on - strand, within PGA1_c24810at 2587.785 kb on + strand, within PGA1_c24810at 2587.810 kb on - strand, within PGA1_c24810at 2587.914 kb on + strandat 2587.914 kb on + strandat 2587.922 kb on - strandat 2587.980 kb on - strandat 2588.038 kb on + strandat 2588.146 kb on - strand, within PGA1_c24820at 2588.328 kb on - strand, within PGA1_c24820at 2588.348 kb on - strand, within PGA1_c24820at 2588.359 kb on + strand, within PGA1_c24820at 2588.393 kb on + strand, within PGA1_c24820at 2588.399 kb on + strand, within PGA1_c24820at 2588.466 kb on + strand, within PGA1_c24820at 2588.495 kb on + strand, within PGA1_c24820at 2588.510 kb on - strand, within PGA1_c24820at 2588.630 kb on + strand, within PGA1_c24820at 2588.740 kb on - strand, within PGA1_c24820at 2588.749 kb on - strand, within PGA1_c24820at 2588.763 kb on + strand, within PGA1_c24820at 2588.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.3 mM
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2,586,789 + PGA1_c24800 0.89 +0.7
2,586,979 - -0.6
2,587,280 - PGA1_c24810 0.22 +1.1
2,587,287 - PGA1_c24810 0.23 +0.1
2,587,316 - PGA1_c24810 0.26 +0.3
2,587,326 - PGA1_c24810 0.27 +0.7
2,587,401 - PGA1_c24810 0.36 +1.3
2,587,466 + PGA1_c24810 0.43 +0.1
2,587,506 + PGA1_c24810 0.48 +0.3
2,587,523 - PGA1_c24810 0.50 +1.0
2,587,572 - PGA1_c24810 0.56 +1.0
2,587,607 - PGA1_c24810 0.60 +0.7
2,587,620 + PGA1_c24810 0.61 +0.8
2,587,654 - PGA1_c24810 0.65 +0.7
2,587,674 + PGA1_c24810 0.67 +0.2
2,587,674 + PGA1_c24810 0.67 +1.5
2,587,674 + PGA1_c24810 0.67 -0.4
2,587,677 - PGA1_c24810 0.68 -1.0
2,587,682 - PGA1_c24810 0.68 -0.8
2,587,682 - PGA1_c24810 0.68 +0.1
2,587,682 - PGA1_c24810 0.68 +1.4
2,587,744 - PGA1_c24810 0.75 +0.9
2,587,744 - PGA1_c24810 0.75 +0.1
2,587,754 - PGA1_c24810 0.77 +1.7
2,587,754 - PGA1_c24810 0.77 -0.4
2,587,754 - PGA1_c24810 0.77 +0.0
2,587,785 + PGA1_c24810 0.80 +0.7
2,587,810 - PGA1_c24810 0.83 +1.6
2,587,914 + +0.7
2,587,914 + +0.5
2,587,922 - +0.6
2,587,980 - +1.4
2,588,038 + -0.0
2,588,146 - PGA1_c24820 0.19 -0.1
2,588,328 - PGA1_c24820 0.40 +0.4
2,588,348 - PGA1_c24820 0.42 +0.5
2,588,359 + PGA1_c24820 0.43 -0.9
2,588,393 + PGA1_c24820 0.47 +0.8
2,588,399 + PGA1_c24820 0.48 +0.5
2,588,466 + PGA1_c24820 0.56 -2.1
2,588,495 + PGA1_c24820 0.59 +1.0
2,588,510 - PGA1_c24820 0.61 -0.3
2,588,630 + PGA1_c24820 0.74 -0.1
2,588,740 - PGA1_c24820 0.87 +0.9
2,588,749 - PGA1_c24820 0.88 +0.2
2,588,763 + PGA1_c24820 0.89 -0.3
2,588,799 - +0.8

Or see this region's nucleotide sequence