Strain Fitness in Marinobacter adhaerens HP15 around HP15_1200

Experiment: m.b. Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1199 and HP15_1200 are separated by 184 nucleotidesHP15_1200 and HP15_1201 are separated by 997 nucleotides HP15_1199: HP15_1199 - conserved hypothetical protein, at 1,234,485 to 1,235,417 _1199 HP15_1200: HP15_1200 - conserved hypothetical protein, at 1,235,602 to 1,238,877 _1200 HP15_1201: HP15_1201 - conserved hypothetical protein, at 1,239,875 to 1,241,359 _1201 Position (kb) 1235 1236 1237 1238 1239Strain fitness (log2 ratio) -2 -1 0 1 2at 1234.706 kb on + strand, within HP15_1199at 1234.832 kb on + strand, within HP15_1199at 1234.877 kb on + strand, within HP15_1199at 1234.892 kb on - strand, within HP15_1199at 1234.892 kb on - strand, within HP15_1199at 1234.892 kb on - strand, within HP15_1199at 1234.892 kb on - strand, within HP15_1199at 1235.067 kb on - strand, within HP15_1199at 1235.077 kb on - strand, within HP15_1199at 1235.105 kb on + strand, within HP15_1199at 1235.116 kb on + strand, within HP15_1199at 1235.121 kb on + strand, within HP15_1199at 1235.396 kb on - strandat 1235.441 kb on - strandat 1235.672 kb on + strandat 1235.680 kb on - strandat 1235.680 kb on - strandat 1235.720 kb on - strandat 1235.889 kb on - strandat 1235.915 kb on + strandat 1235.915 kb on + strandat 1235.915 kb on + strandat 1235.915 kb on + strandat 1235.915 kb on + strandat 1235.963 kb on + strand, within HP15_1200at 1235.983 kb on + strand, within HP15_1200at 1235.991 kb on - strand, within HP15_1200at 1236.024 kb on - strand, within HP15_1200at 1236.024 kb on - strand, within HP15_1200at 1236.126 kb on - strand, within HP15_1200at 1236.126 kb on - strand, within HP15_1200at 1236.126 kb on - strand, within HP15_1200at 1236.199 kb on + strand, within HP15_1200at 1236.287 kb on - strand, within HP15_1200at 1236.305 kb on + strand, within HP15_1200at 1236.506 kb on + strand, within HP15_1200at 1236.506 kb on + strand, within HP15_1200at 1236.511 kb on + strand, within HP15_1200at 1236.527 kb on + strand, within HP15_1200at 1236.527 kb on + strand, within HP15_1200at 1236.527 kb on + strand, within HP15_1200at 1236.527 kb on + strand, within HP15_1200at 1236.574 kb on + strand, within HP15_1200at 1236.666 kb on + strand, within HP15_1200at 1236.771 kb on - strand, within HP15_1200at 1236.802 kb on - strand, within HP15_1200at 1236.841 kb on + strand, within HP15_1200at 1237.087 kb on + strand, within HP15_1200at 1237.095 kb on + strand, within HP15_1200at 1237.095 kb on + strand, within HP15_1200at 1237.096 kb on - strand, within HP15_1200at 1237.212 kb on + strand, within HP15_1200at 1237.236 kb on + strand, within HP15_1200at 1237.472 kb on + strand, within HP15_1200at 1237.566 kb on - strand, within HP15_1200at 1237.617 kb on - strand, within HP15_1200at 1237.624 kb on + strand, within HP15_1200at 1237.738 kb on + strand, within HP15_1200at 1237.842 kb on + strand, within HP15_1200at 1237.850 kb on - strand, within HP15_1200at 1237.917 kb on - strand, within HP15_1200at 1237.931 kb on - strand, within HP15_1200at 1238.087 kb on - strand, within HP15_1200at 1238.298 kb on - strand, within HP15_1200at 1238.512 kb on + strand, within HP15_1200at 1238.656 kb on + strandat 1238.744 kb on + strandat 1238.751 kb on - strandat 1238.791 kb on - strandat 1238.843 kb on - strandat 1238.861 kb on + strandat 1238.899 kb on + strandat 1238.907 kb on - strandat 1238.917 kb on - strandat 1239.063 kb on - strandat 1239.111 kb on - strandat 1239.113 kb on - strandat 1239.212 kb on + strandat 1239.238 kb on - strandat 1239.275 kb on - strandat 1239.335 kb on + strandat 1239.340 kb on + strandat 1239.512 kb on + strandat 1239.719 kb on - strandat 1239.853 kb on - strandat 1239.877 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.016 mg/ml
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1,234,706 + HP15_1199 0.24 +0.5
1,234,832 + HP15_1199 0.37 +2.5
1,234,877 + HP15_1199 0.42 -0.5
1,234,892 - HP15_1199 0.44 +0.9
1,234,892 - HP15_1199 0.44 -0.3
1,234,892 - HP15_1199 0.44 +0.6
1,234,892 - HP15_1199 0.44 +0.2
1,235,067 - HP15_1199 0.62 -1.2
1,235,077 - HP15_1199 0.63 +0.2
1,235,105 + HP15_1199 0.66 +0.6
1,235,116 + HP15_1199 0.68 +0.6
1,235,121 + HP15_1199 0.68 -0.5
1,235,396 - +0.6
1,235,441 - -1.0
1,235,672 + +0.3
1,235,680 - +0.8
1,235,680 - +0.6
1,235,720 - +1.1
1,235,889 - +0.8
1,235,915 + +1.2
1,235,915 + +0.5
1,235,915 + +0.5
1,235,915 + -0.3
1,235,915 + -0.2
1,235,963 + HP15_1200 0.11 +1.4
1,235,983 + HP15_1200 0.12 -0.1
1,235,991 - HP15_1200 0.12 -0.2
1,236,024 - HP15_1200 0.13 -0.5
1,236,024 - HP15_1200 0.13 -1.0
1,236,126 - HP15_1200 0.16 +0.0
1,236,126 - HP15_1200 0.16 -0.1
1,236,126 - HP15_1200 0.16 -0.5
1,236,199 + HP15_1200 0.18 +0.0
1,236,287 - HP15_1200 0.21 -0.5
1,236,305 + HP15_1200 0.21 +0.7
1,236,506 + HP15_1200 0.28 -0.6
1,236,506 + HP15_1200 0.28 +0.7
1,236,511 + HP15_1200 0.28 +1.0
1,236,527 + HP15_1200 0.28 +0.3
1,236,527 + HP15_1200 0.28 -1.2
1,236,527 + HP15_1200 0.28 +0.9
1,236,527 + HP15_1200 0.28 +1.7
1,236,574 + HP15_1200 0.30 -0.1
1,236,666 + HP15_1200 0.32 +0.3
1,236,771 - HP15_1200 0.36 +0.3
1,236,802 - HP15_1200 0.37 -0.2
1,236,841 + HP15_1200 0.38 -0.3
1,237,087 + HP15_1200 0.45 +0.7
1,237,095 + HP15_1200 0.46 +0.2
1,237,095 + HP15_1200 0.46 -0.3
1,237,096 - HP15_1200 0.46 +0.9
1,237,212 + HP15_1200 0.49 +0.3
1,237,236 + HP15_1200 0.50 -1.0
1,237,472 + HP15_1200 0.57 -2.2
1,237,566 - HP15_1200 0.60 +0.9
1,237,617 - HP15_1200 0.62 -1.0
1,237,624 + HP15_1200 0.62 +0.3
1,237,738 + HP15_1200 0.65 -0.2
1,237,842 + HP15_1200 0.68 -0.2
1,237,850 - HP15_1200 0.69 +0.9
1,237,917 - HP15_1200 0.71 +0.5
1,237,931 - HP15_1200 0.71 +0.3
1,238,087 - HP15_1200 0.76 +0.3
1,238,298 - HP15_1200 0.82 +0.5
1,238,512 + HP15_1200 0.89 +0.2
1,238,656 + -0.5
1,238,744 + +0.7
1,238,751 - +0.1
1,238,791 - -0.5
1,238,843 - +0.8
1,238,861 + +0.0
1,238,899 + +0.2
1,238,907 - +0.8
1,238,917 - +0.2
1,239,063 - +0.2
1,239,111 - +0.1
1,239,113 - -0.1
1,239,212 + +0.8
1,239,238 - +0.5
1,239,275 - -0.3
1,239,335 + -0.5
1,239,340 + -0.3
1,239,512 + +0.2
1,239,719 - +0.2
1,239,853 - +1.1
1,239,877 + +0.2

Or see this region's nucleotide sequence