Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3500 and Dsui_3501 overlap by 52 nucleotides Dsui_3501 and Dsui_3502 are separated by 18 nucleotides Dsui_3502 and Dsui_3503 are separated by 7 nucleotides Dsui_3503 and Dsui_3504 are separated by 12 nucleotides
Dsui_3500: Dsui_3500 - N-acetylmuramoyl-L-alanine amidase, at 3,766,238 to 3,767,605
_3500
Dsui_3501: Dsui_3501 - ATPase, YjeE family, at 3,767,554 to 3,768,081
_3501
Dsui_3502: Dsui_3502 - iron-sulfur cluster binding protein, putative, at 3,768,100 to 3,769,218
_3502
Dsui_3503: Dsui_3503 - protein of unknown function (DUF1992), at 3,769,226 to 3,769,651
_3503
Dsui_3504: Dsui_3504 - rhodanese-related sulfurtransferase, at 3,769,664 to 3,770,512
_3504
Position (kb)
3768
3769
3770 Strain fitness (log2 ratio)
-2
-1
0
1 at 3768.172 kb on - strand at 3768.190 kb on + strand at 3768.251 kb on - strand, within Dsui_3502 at 3768.425 kb on - strand, within Dsui_3502 at 3768.428 kb on + strand, within Dsui_3502 at 3768.458 kb on + strand at 3768.481 kb on - strand at 3768.563 kb on + strand, within Dsui_3502 at 3768.639 kb on - strand, within Dsui_3502 at 3768.642 kb on + strand, within Dsui_3502 at 3768.800 kb on + strand, within Dsui_3502 at 3768.902 kb on - strand, within Dsui_3502 at 3769.075 kb on + strand, within Dsui_3502 at 3769.159 kb on + strand at 3769.172 kb on - strand at 3769.213 kb on + strand at 3769.275 kb on - strand, within Dsui_3503 at 3769.275 kb on - strand, within Dsui_3503 at 3769.327 kb on + strand at 3769.429 kb on + strand at 3769.514 kb on + strand at 3769.563 kb on - strand, within Dsui_3503 at 3769.596 kb on + strand, within Dsui_3503 at 3769.614 kb on - strand at 3769.643 kb on + strand at 3769.643 kb on + strand at 3769.716 kb on + strand at 3769.804 kb on - strand, within Dsui_3504 at 3769.828 kb on + strand, within Dsui_3504 at 3769.831 kb on + strand at 3769.889 kb on - strand, within Dsui_3504
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 3,768,172 - +0.1 3,768,190 + +0.6 3,768,251 - Dsui_3502 0.13 -1.5 3,768,425 - Dsui_3502 0.29 -0.4 3,768,428 + Dsui_3502 0.29 -0.4 3,768,458 + +0.6 3,768,481 - +0.6 3,768,563 + Dsui_3502 0.41 -1.4 3,768,639 - Dsui_3502 0.48 +0.3 3,768,642 + Dsui_3502 0.48 -1.0 3,768,800 + Dsui_3502 0.63 -1.0 3,768,902 - Dsui_3502 0.72 -1.0 3,769,075 + Dsui_3502 0.87 +0.6 3,769,159 + -2.5 3,769,172 - -0.4 3,769,213 + +0.6 3,769,275 - Dsui_3503 0.12 +0.4 3,769,275 - Dsui_3503 0.12 +0.3 3,769,327 + +0.6 3,769,429 + +0.6 3,769,514 + +0.6 3,769,563 - Dsui_3503 0.79 +0.2 3,769,596 + Dsui_3503 0.87 +0.6 3,769,614 - +0.5 3,769,643 + +0.6 3,769,643 + -1.0 3,769,716 + +0.3 3,769,804 - Dsui_3504 0.16 +0.1 3,769,828 + Dsui_3504 0.19 -1.4 3,769,831 + -0.4 3,769,889 - Dsui_3504 0.27 +0.0
Or see this region's nucleotide sequence