Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3465 and Dsui_3466 are separated by 19 nucleotides Dsui_3466 and Dsui_3467 overlap by 8 nucleotides Dsui_3467 and Dsui_3468 are separated by 94 nucleotides
Dsui_3465: Dsui_3465 - signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 3,727,975 to 3,729,807
_3465
Dsui_3466: Dsui_3466 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 3,729,827 to 3,730,186
_3466
Dsui_3467: Dsui_3467 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,730,179 to 3,731,525
_3467
Dsui_3468: Dsui_3468 - Response regulator receiver domain protein,histidine kinase, at 3,731,620 to 3,732,789
_3468
Position (kb)
3730
3731
3732 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3729.263 kb on + strand, within Dsui_3465 at 3729.268 kb on + strand, within Dsui_3465 at 3729.281 kb on + strand, within Dsui_3465 at 3729.291 kb on + strand, within Dsui_3465 at 3729.433 kb on - strand at 3729.466 kb on - strand at 3729.664 kb on + strand at 3729.809 kb on - strand at 3729.852 kb on + strand at 3730.029 kb on - strand at 3730.250 kb on + strand at 3730.251 kb on + strand at 3730.275 kb on - strand at 3730.508 kb on - strand, within Dsui_3467 at 3730.680 kb on - strand at 3730.691 kb on + strand at 3730.783 kb on + strand, within Dsui_3467 at 3730.887 kb on - strand, within Dsui_3467 at 3730.948 kb on - strand at 3731.037 kb on - strand at 3731.084 kb on + strand, within Dsui_3467 at 3731.110 kb on - strand, within Dsui_3467 at 3731.115 kb on - strand, within Dsui_3467 at 3731.728 kb on + strand at 3731.736 kb on - strand at 3731.844 kb on + strand, within Dsui_3468 at 3731.852 kb on - strand at 3731.881 kb on + strand, within Dsui_3468 at 3731.961 kb on + strand, within Dsui_3468 at 3732.001 kb on - strand at 3732.307 kb on + strand, within Dsui_3468 at 3732.315 kb on - strand, within Dsui_3468 at 3732.409 kb on + strand, within Dsui_3468 at 3732.513 kb on + strand, within Dsui_3468
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 3,729,263 + Dsui_3465 0.70 -0.4 3,729,268 + Dsui_3465 0.71 -1.4 3,729,281 + Dsui_3465 0.71 +2.5 3,729,291 + Dsui_3465 0.72 -2.2 3,729,433 - +0.6 3,729,466 - +0.6 3,729,664 + -0.4 3,729,809 - +0.6 3,729,852 + -0.4 3,730,029 - -1.4 3,730,250 + -0.4 3,730,251 + -0.4 3,730,275 - +0.6 3,730,508 - Dsui_3467 0.24 +0.6 3,730,680 - -1.0 3,730,691 + +0.6 3,730,783 + Dsui_3467 0.45 -1.4 3,730,887 - Dsui_3467 0.53 -1.0 3,730,948 - +0.6 3,731,037 - +0.6 3,731,084 + Dsui_3467 0.67 +0.6 3,731,110 - Dsui_3467 0.69 -2.2 3,731,115 - Dsui_3467 0.69 +0.6 3,731,728 + +0.2 3,731,736 - -0.4 3,731,844 + Dsui_3468 0.19 +1.3 3,731,852 - +0.6 3,731,881 + Dsui_3468 0.22 +0.6 3,731,961 + Dsui_3468 0.29 +0.8 3,732,001 - +0.6 3,732,307 + Dsui_3468 0.59 -1.4 3,732,315 - Dsui_3468 0.59 -0.4 3,732,409 + Dsui_3468 0.67 -1.5 3,732,513 + Dsui_3468 0.76 -1.7
Or see this region's nucleotide sequence