Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3411 and Dsui_3412 are separated by 61 nucleotides Dsui_3412 and Dsui_3413 are separated by 6 nucleotides Dsui_3413 and Dsui_3414 are separated by 1 nucleotides
Dsui_3411: Dsui_3411 - hypothetical protein, at 3,663,977 to 3,664,288
_3411
Dsui_3412: Dsui_3412 - putative signal transduction protein, at 3,664,350 to 3,665,246
_3412
Dsui_3413: Dsui_3413 - Fe-S oxidoreductase, at 3,665,253 to 3,666,515
_3413
Dsui_3414: Dsui_3414 - FAD/FMN-dependent dehydrogenase, at 3,666,517 to 3,667,617
_3414
Position (kb)
3665
3666
3667 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3664.291 kb on - strand at 3664.291 kb on - strand at 3664.294 kb on - strand at 3664.307 kb on - strand at 3664.345 kb on - strand at 3664.356 kb on - strand at 3664.397 kb on - strand at 3664.449 kb on + strand at 3664.457 kb on - strand, within Dsui_3412 at 3664.481 kb on + strand, within Dsui_3412 at 3664.522 kb on - strand, within Dsui_3412 at 3664.602 kb on + strand, within Dsui_3412 at 3664.667 kb on + strand at 3664.672 kb on + strand, within Dsui_3412 at 3664.798 kb on + strand, within Dsui_3412 at 3664.850 kb on - strand, within Dsui_3412 at 3664.873 kb on + strand, within Dsui_3412 at 3664.881 kb on - strand, within Dsui_3412 at 3664.917 kb on + strand, within Dsui_3412 at 3664.922 kb on + strand, within Dsui_3412 at 3664.936 kb on - strand, within Dsui_3412 at 3664.940 kb on + strand, within Dsui_3412 at 3664.948 kb on - strand, within Dsui_3412 at 3664.989 kb on + strand, within Dsui_3412 at 3665.007 kb on + strand, within Dsui_3412 at 3665.010 kb on - strand, within Dsui_3412 at 3665.025 kb on - strand, within Dsui_3412 at 3665.113 kb on + strand at 3665.157 kb on - strand at 3665.204 kb on - strand at 3665.217 kb on - strand at 3665.231 kb on + strand at 3665.308 kb on + strand at 3665.346 kb on - strand at 3665.403 kb on + strand, within Dsui_3413 at 3665.429 kb on + strand at 3665.515 kb on - strand, within Dsui_3413 at 3665.554 kb on + strand, within Dsui_3413 at 3665.562 kb on - strand, within Dsui_3413 at 3666.048 kb on + strand at 3666.102 kb on - strand, within Dsui_3413 at 3666.305 kb on - strand, within Dsui_3413 at 3666.369 kb on - strand, within Dsui_3413 at 3666.406 kb on - strand at 3666.435 kb on + strand at 3666.465 kb on - strand at 3666.524 kb on + strand at 3666.652 kb on + strand, within Dsui_3414 at 3666.727 kb on + strand, within Dsui_3414 at 3666.755 kb on - strand, within Dsui_3414 at 3666.819 kb on + strand, within Dsui_3414 at 3666.856 kb on - strand, within Dsui_3414 at 3666.922 kb on + strand, within Dsui_3414 at 3667.048 kb on + strand, within Dsui_3414 at 3667.055 kb on + strand, within Dsui_3414 at 3667.055 kb on + strand at 3667.069 kb on - strand, within Dsui_3414 at 3667.069 kb on - strand, within Dsui_3414 at 3667.106 kb on + strand at 3667.230 kb on - strand, within Dsui_3414 at 3667.237 kb on - strand, within Dsui_3414 at 3667.278 kb on - strand, within Dsui_3414 at 3667.378 kb on - strand, within Dsui_3414 at 3667.384 kb on - strand, within Dsui_3414 at 3667.419 kb on - strand, within Dsui_3414 at 3667.509 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 3,664,291 - -0.2 3,664,291 - -0.2 3,664,294 - +0.4 3,664,307 - +0.4 3,664,345 - -0.3 3,664,356 - -0.5 3,664,397 - -0.1 3,664,449 + -0.4 3,664,457 - Dsui_3412 0.12 -0.2 3,664,481 + Dsui_3412 0.15 -2.0 3,664,522 - Dsui_3412 0.19 +0.4 3,664,602 + Dsui_3412 0.28 -1.7 3,664,667 + +0.6 3,664,672 + Dsui_3412 0.36 -0.4 3,664,798 + Dsui_3412 0.50 +0.6 3,664,850 - Dsui_3412 0.56 +0.5 3,664,873 + Dsui_3412 0.58 +0.6 3,664,881 - Dsui_3412 0.59 -0.2 3,664,917 + Dsui_3412 0.63 -0.4 3,664,922 + Dsui_3412 0.64 -1.4 3,664,936 - Dsui_3412 0.65 +0.3 3,664,940 + Dsui_3412 0.66 -1.7 3,664,948 - Dsui_3412 0.67 +0.0 3,664,989 + Dsui_3412 0.71 -1.0 3,665,007 + Dsui_3412 0.73 +0.6 3,665,010 - Dsui_3412 0.74 -0.8 3,665,025 - Dsui_3412 0.75 +0.2 3,665,113 + +0.6 3,665,157 - +0.1 3,665,204 - -0.5 3,665,217 - +0.4 3,665,231 + -1.0 3,665,308 + -1.0 3,665,346 - +1.3 3,665,403 + Dsui_3413 0.12 -1.4 3,665,429 + +0.6 3,665,515 - Dsui_3413 0.21 -1.7 3,665,554 + Dsui_3413 0.24 -1.0 3,665,562 - Dsui_3413 0.24 +1.5 3,666,048 + +0.6 3,666,102 - Dsui_3413 0.67 +1.3 3,666,305 - Dsui_3413 0.83 +2.4 3,666,369 - Dsui_3413 0.88 +2.1 3,666,406 - +1.9 3,666,435 + +0.6 3,666,465 - +1.4 3,666,524 + -2.0 3,666,652 + Dsui_3414 0.12 -0.4 3,666,727 + Dsui_3414 0.19 -1.7 3,666,755 - Dsui_3414 0.22 +1.4 3,666,819 + Dsui_3414 0.27 -1.0 3,666,856 - Dsui_3414 0.31 +1.9 3,666,922 + Dsui_3414 0.37 -0.4 3,667,048 + Dsui_3414 0.48 -0.4 3,667,055 + Dsui_3414 0.49 -1.0 3,667,055 + +0.6 3,667,069 - Dsui_3414 0.50 +1.5 3,667,069 - Dsui_3414 0.50 +1.3 3,667,106 + +0.6 3,667,230 - Dsui_3414 0.65 +3.1 3,667,237 - Dsui_3414 0.65 +1.0 3,667,278 - Dsui_3414 0.69 +1.7 3,667,378 - Dsui_3414 0.78 +1.5 3,667,384 - Dsui_3414 0.79 +1.4 3,667,419 - Dsui_3414 0.82 +1.5 3,667,509 - +1.5
Or see this region's nucleotide sequence