Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3241 and Dsui_3242 overlap by 17 nucleotides Dsui_3242 and Dsui_3243 are separated by 21 nucleotides Dsui_3243 and Dsui_3244 are separated by 22 nucleotides Dsui_3244 and Dsui_3245 are separated by 66 nucleotides Dsui_3245 and Dsui_3246 are separated by 12 nucleotides Dsui_3246 and Dsui_3247 overlap by 1 nucleotides
Dsui_3241: Dsui_3241 - NTP pyrophosphohydrolase, at 3,485,186 to 3,485,812
_3241
Dsui_3242: Dsui_3242 - hypothetical protein, at 3,485,796 to 3,486,056
_3242
Dsui_3243: Dsui_3243 - clan AA aspartic protease, TIGR02281 family, at 3,486,078 to 3,486,728
_3243
Dsui_3244: Dsui_3244 - GMP synthase family protein, at 3,486,751 to 3,487,461
_3244
Dsui_3245: Dsui_3245 - hypothetical protein, at 3,487,528 to 3,488,022
_3245
Dsui_3246: Dsui_3246 - hypothetical protein, at 3,488,035 to 3,488,349
_3246
Dsui_3247: Dsui_3247 - Protein of unknown function (DUF2788), at 3,488,349 to 3,488,570
_3247
Position (kb)
3486
3487
3488 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3485.776 kb on + strand at 3485.840 kb on + strand, within Dsui_3242 at 3485.998 kb on + strand, within Dsui_3242 at 3485.998 kb on + strand, within Dsui_3242 at 3485.998 kb on + strand, within Dsui_3242 at 3485.998 kb on + strand, within Dsui_3242 at 3486.006 kb on - strand, within Dsui_3242 at 3486.006 kb on - strand, within Dsui_3242 at 3486.008 kb on + strand, within Dsui_3242 at 3486.027 kb on - strand, within Dsui_3242 at 3486.073 kb on - strand at 3486.073 kb on - strand at 3486.097 kb on + strand at 3486.105 kb on - strand at 3486.163 kb on - strand, within Dsui_3243 at 3486.174 kb on + strand, within Dsui_3243 at 3486.182 kb on - strand, within Dsui_3243 at 3486.236 kb on - strand, within Dsui_3243 at 3486.246 kb on - strand, within Dsui_3243 at 3486.300 kb on - strand, within Dsui_3243 at 3486.349 kb on - strand, within Dsui_3243 at 3486.431 kb on + strand, within Dsui_3243 at 3486.431 kb on + strand, within Dsui_3243 at 3486.437 kb on + strand, within Dsui_3243 at 3486.439 kb on - strand, within Dsui_3243 at 3486.445 kb on - strand, within Dsui_3243 at 3486.445 kb on - strand, within Dsui_3243 at 3486.474 kb on + strand, within Dsui_3243 at 3486.493 kb on - strand, within Dsui_3243 at 3486.539 kb on - strand, within Dsui_3243 at 3486.555 kb on + strand, within Dsui_3243 at 3486.578 kb on + strand, within Dsui_3243 at 3486.614 kb on + strand, within Dsui_3243 at 3486.696 kb on - strand at 3486.707 kb on + strand at 3486.710 kb on - strand at 3486.833 kb on + strand, within Dsui_3244 at 3486.841 kb on - strand, within Dsui_3244 at 3486.841 kb on - strand, within Dsui_3244 at 3486.841 kb on - strand, within Dsui_3244 at 3486.841 kb on - strand, within Dsui_3244 at 3486.841 kb on - strand, within Dsui_3244 at 3486.910 kb on - strand, within Dsui_3244 at 3486.939 kb on + strand, within Dsui_3244 at 3486.949 kb on + strand, within Dsui_3244 at 3486.956 kb on + strand, within Dsui_3244 at 3486.956 kb on + strand, within Dsui_3244 at 3486.956 kb on + strand, within Dsui_3244 at 3486.956 kb on + strand, within Dsui_3244 at 3486.964 kb on - strand, within Dsui_3244 at 3487.036 kb on + strand, within Dsui_3244 at 3487.092 kb on - strand, within Dsui_3244 at 3487.094 kb on + strand, within Dsui_3244 at 3487.094 kb on + strand, within Dsui_3244 at 3487.102 kb on - strand, within Dsui_3244 at 3487.132 kb on - strand, within Dsui_3244 at 3487.177 kb on - strand, within Dsui_3244 at 3487.188 kb on + strand, within Dsui_3244 at 3487.196 kb on - strand, within Dsui_3244 at 3487.251 kb on + strand, within Dsui_3244 at 3487.252 kb on + strand, within Dsui_3244 at 3487.371 kb on - strand, within Dsui_3244 at 3487.464 kb on + strand at 3487.592 kb on - strand, within Dsui_3245 at 3487.739 kb on + strand, within Dsui_3245 at 3487.835 kb on + strand, within Dsui_3245 at 3487.835 kb on + strand, within Dsui_3245 at 3487.835 kb on + strand, within Dsui_3245 at 3487.835 kb on + strand, within Dsui_3245 at 3487.835 kb on + strand, within Dsui_3245 at 3487.835 kb on + strand, within Dsui_3245 at 3487.835 kb on + strand, within Dsui_3245 at 3487.835 kb on + strand, within Dsui_3245 at 3487.835 kb on + strand, within Dsui_3245 at 3487.835 kb on + strand, within Dsui_3245 at 3487.843 kb on - strand, within Dsui_3245 at 3487.843 kb on - strand, within Dsui_3245 at 3487.843 kb on - strand, within Dsui_3245 at 3487.843 kb on - strand, within Dsui_3245 at 3488.035 kb on - strand at 3488.142 kb on - strand, within Dsui_3246 at 3488.191 kb on + strand, within Dsui_3246 at 3488.193 kb on - strand, within Dsui_3246 at 3488.223 kb on - strand, within Dsui_3246 at 3488.288 kb on - strand, within Dsui_3246 at 3488.300 kb on + strand, within Dsui_3246 at 3488.308 kb on - strand, within Dsui_3246 at 3488.308 kb on - strand, within Dsui_3246 at 3488.323 kb on - strand at 3488.407 kb on - strand, within Dsui_3247 at 3488.431 kb on + strand, within Dsui_3247 at 3488.438 kb on - strand, within Dsui_3247
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 3,485,776 + -0.3 3,485,840 + Dsui_3242 0.17 -0.3 3,485,998 + Dsui_3242 0.77 -0.3 3,485,998 + Dsui_3242 0.77 -0.3 3,485,998 + Dsui_3242 0.77 -1.7 3,485,998 + Dsui_3242 0.77 +0.7 3,486,006 - Dsui_3242 0.80 -0.3 3,486,006 - Dsui_3242 0.80 +0.0 3,486,008 + Dsui_3242 0.81 -0.9 3,486,027 - Dsui_3242 0.89 -0.4 3,486,073 - +0.5 3,486,073 - -0.1 3,486,097 + -1.9 3,486,105 - +0.2 3,486,163 - Dsui_3243 0.13 -0.4 3,486,174 + Dsui_3243 0.15 -1.7 3,486,182 - Dsui_3243 0.16 +0.1 3,486,236 - Dsui_3243 0.24 -1.3 3,486,246 - Dsui_3243 0.26 -0.2 3,486,300 - Dsui_3243 0.34 -0.2 3,486,349 - Dsui_3243 0.42 -0.1 3,486,431 + Dsui_3243 0.54 -0.3 3,486,431 + Dsui_3243 0.54 -0.9 3,486,437 + Dsui_3243 0.55 -0.9 3,486,439 - Dsui_3243 0.55 -0.0 3,486,445 - Dsui_3243 0.56 +0.6 3,486,445 - Dsui_3243 0.56 -0.3 3,486,474 + Dsui_3243 0.61 +0.7 3,486,493 - Dsui_3243 0.64 -0.0 3,486,539 - Dsui_3243 0.71 -0.1 3,486,555 + Dsui_3243 0.73 -1.7 3,486,578 + Dsui_3243 0.77 +0.7 3,486,614 + Dsui_3243 0.82 -0.3 3,486,696 - +0.4 3,486,707 + +0.7 3,486,710 - +0.2 3,486,833 + Dsui_3244 0.12 +0.7 3,486,841 - Dsui_3244 0.13 -1.9 3,486,841 - Dsui_3244 0.13 -0.3 3,486,841 - Dsui_3244 0.13 +0.7 3,486,841 - Dsui_3244 0.13 -0.9 3,486,841 - Dsui_3244 0.13 -0.3 3,486,910 - Dsui_3244 0.22 -0.9 3,486,939 + Dsui_3244 0.26 -2.1 3,486,949 + Dsui_3244 0.28 +1.8 3,486,956 + Dsui_3244 0.29 -0.9 3,486,956 + Dsui_3244 0.29 +2.5 3,486,956 + Dsui_3244 0.29 -0.3 3,486,956 + Dsui_3244 0.29 -0.7 3,486,964 - Dsui_3244 0.30 +0.7 3,487,036 + Dsui_3244 0.40 -3.2 3,487,092 - Dsui_3244 0.48 -0.9 3,487,094 + Dsui_3244 0.48 -0.3 3,487,094 + Dsui_3244 0.48 +0.7 3,487,102 - Dsui_3244 0.49 -0.4 3,487,132 - Dsui_3244 0.54 -1.1 3,487,177 - Dsui_3244 0.60 -2.2 3,487,188 + Dsui_3244 0.61 -0.3 3,487,196 - Dsui_3244 0.63 -0.5 3,487,251 + Dsui_3244 0.70 +0.7 3,487,252 + Dsui_3244 0.70 +0.7 3,487,371 - Dsui_3244 0.87 +0.7 3,487,464 + -0.3 3,487,592 - Dsui_3245 0.13 +0.3 3,487,739 + Dsui_3245 0.43 +0.7 3,487,835 + Dsui_3245 0.62 +0.7 3,487,835 + Dsui_3245 0.62 -0.3 3,487,835 + Dsui_3245 0.62 +0.7 3,487,835 + Dsui_3245 0.62 -1.7 3,487,835 + Dsui_3245 0.62 -0.3 3,487,835 + Dsui_3245 0.62 +0.7 3,487,835 + Dsui_3245 0.62 +0.7 3,487,835 + Dsui_3245 0.62 +0.7 3,487,835 + Dsui_3245 0.62 -1.7 3,487,835 + Dsui_3245 0.62 +0.7 3,487,843 - Dsui_3245 0.64 +0.8 3,487,843 - Dsui_3245 0.64 +0.2 3,487,843 - Dsui_3245 0.64 +0.6 3,487,843 - Dsui_3245 0.64 +0.2 3,488,035 - +0.8 3,488,142 - Dsui_3246 0.34 +0.3 3,488,191 + Dsui_3246 0.50 -1.3 3,488,193 - Dsui_3246 0.50 +1.0 3,488,223 - Dsui_3246 0.60 +0.9 3,488,288 - Dsui_3246 0.80 +0.4 3,488,300 + Dsui_3246 0.84 -0.3 3,488,308 - Dsui_3246 0.87 +0.1 3,488,308 - Dsui_3246 0.87 +0.7 3,488,323 - +0.2 3,488,407 - Dsui_3247 0.26 +2.3 3,488,431 + Dsui_3247 0.37 +1.3 3,488,438 - Dsui_3247 0.40 +2.1
Or see this region's nucleotide sequence