Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3227 and Dsui_3228 are separated by 163 nucleotides Dsui_3228 and Dsui_3229 are separated by 72 nucleotides
Dsui_3227: Dsui_3227 - 2-isopropylmalate synthase, at 3,465,263 to 3,466,945
_3227
Dsui_3228: Dsui_3228 - transcriptional regulator, at 3,467,109 to 3,467,576
_3228
Dsui_3229: Dsui_3229 - transglutaminase-like enzyme, predicted cysteine protease, at 3,467,649 to 3,468,590
_3229
Position (kb)
3467
3468 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3466.199 kb on - strand, within Dsui_3227 at 3466.286 kb on - strand, within Dsui_3227 at 3466.327 kb on - strand, within Dsui_3227 at 3466.386 kb on - strand, within Dsui_3227 at 3466.405 kb on + strand, within Dsui_3227 at 3466.477 kb on + strand at 3466.546 kb on + strand at 3466.552 kb on - strand, within Dsui_3227 at 3466.553 kb on - strand, within Dsui_3227 at 3466.611 kb on - strand, within Dsui_3227 at 3466.681 kb on + strand at 3466.717 kb on - strand, within Dsui_3227 at 3466.722 kb on - strand, within Dsui_3227 at 3466.837 kb on - strand at 3466.871 kb on - strand at 3466.886 kb on - strand at 3466.941 kb on - strand at 3467.154 kb on - strand at 3467.287 kb on + strand, within Dsui_3228 at 3467.338 kb on + strand, within Dsui_3228 at 3467.356 kb on + strand, within Dsui_3228 at 3467.420 kb on - strand, within Dsui_3228 at 3467.539 kb on + strand at 3467.556 kb on + strand at 3467.563 kb on - strand at 3467.617 kb on - strand at 3467.660 kb on - strand at 3467.667 kb on + strand at 3467.714 kb on + strand at 3467.722 kb on - strand at 3467.722 kb on - strand at 3467.722 kb on - strand at 3467.763 kb on - strand, within Dsui_3229 at 3467.805 kb on + strand at 3467.812 kb on - strand, within Dsui_3229 at 3467.820 kb on + strand at 3467.828 kb on - strand, within Dsui_3229 at 3467.950 kb on + strand at 3468.133 kb on - strand, within Dsui_3229 at 3468.149 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 3,466,199 - Dsui_3227 0.56 -0.1 3,466,286 - Dsui_3227 0.61 -0.3 3,466,327 - Dsui_3227 0.63 -0.2 3,466,386 - Dsui_3227 0.67 -2.8 3,466,405 + Dsui_3227 0.68 -1.3 3,466,477 + -0.9 3,466,546 + +0.7 3,466,552 - Dsui_3227 0.77 -0.9 3,466,553 - Dsui_3227 0.77 -0.3 3,466,611 - Dsui_3227 0.80 +1.3 3,466,681 + +0.7 3,466,717 - Dsui_3227 0.86 -0.3 3,466,722 - Dsui_3227 0.87 -2.8 3,466,837 - -0.3 3,466,871 - +0.1 3,466,886 - +0.3 3,466,941 - -1.3 3,467,154 - -2.1 3,467,287 + Dsui_3228 0.38 -0.5 3,467,338 + Dsui_3228 0.49 +0.7 3,467,356 + Dsui_3228 0.53 -0.3 3,467,420 - Dsui_3228 0.66 -1.7 3,467,539 + -0.0 3,467,556 + +0.2 3,467,563 - -0.9 3,467,617 - -0.3 3,467,660 - -0.9 3,467,667 + +0.7 3,467,714 + -0.9 3,467,722 - +0.7 3,467,722 - +0.7 3,467,722 - -2.7 3,467,763 - Dsui_3229 0.12 -1.3 3,467,805 + -0.9 3,467,812 - Dsui_3229 0.17 -1.9 3,467,820 + -0.9 3,467,828 - Dsui_3229 0.19 -0.9 3,467,950 + +0.7 3,468,133 - Dsui_3229 0.51 -0.7 3,468,149 + +0.7
Or see this region's nucleotide sequence