Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3163 and Dsui_3164 are separated by 23 nucleotides Dsui_3164 and Dsui_3165 overlap by 14 nucleotides
Dsui_3163: Dsui_3163 - putative membrane protein, at 3,390,421 to 3,391,566
_3163
Dsui_3164: Dsui_3164 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,391,590 to 3,392,783
_3164
Dsui_3165: Dsui_3165 - tRNA(Ile)-lysidine synthetase, at 3,392,770 to 3,394,215
_3165
Position (kb)
3391
3392
3393 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3390.893 kb on + strand, within Dsui_3163 at 3390.893 kb on + strand, within Dsui_3163 at 3391.015 kb on - strand, within Dsui_3163 at 3391.021 kb on - strand, within Dsui_3163 at 3391.049 kb on + strand, within Dsui_3163 at 3391.062 kb on + strand, within Dsui_3163 at 3391.072 kb on + strand at 3391.188 kb on - strand, within Dsui_3163 at 3391.221 kb on - strand, within Dsui_3163 at 3391.278 kb on - strand, within Dsui_3163 at 3391.333 kb on + strand, within Dsui_3163 at 3391.371 kb on + strand, within Dsui_3163 at 3391.389 kb on + strand, within Dsui_3163 at 3391.421 kb on - strand, within Dsui_3163 at 3391.568 kb on - strand at 3391.643 kb on - strand at 3391.685 kb on + strand at 3391.911 kb on - strand, within Dsui_3164 at 3391.961 kb on + strand, within Dsui_3164 at 3392.018 kb on + strand, within Dsui_3164 at 3392.080 kb on + strand at 3392.152 kb on + strand at 3392.162 kb on + strand, within Dsui_3164 at 3392.372 kb on + strand at 3392.398 kb on - strand, within Dsui_3164 at 3392.398 kb on - strand, within Dsui_3164 at 3392.470 kb on - strand, within Dsui_3164 at 3392.515 kb on + strand at 3392.554 kb on - strand, within Dsui_3164 at 3392.565 kb on - strand, within Dsui_3164 at 3392.565 kb on - strand, within Dsui_3164 at 3392.565 kb on - strand, within Dsui_3164 at 3392.565 kb on - strand, within Dsui_3164 at 3392.582 kb on - strand, within Dsui_3164 at 3392.722 kb on + strand at 3392.753 kb on + strand at 3392.768 kb on + strand at 3392.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 3,390,893 + Dsui_3163 0.41 +0.2 3,390,893 + Dsui_3163 0.41 +1.0 3,391,015 - Dsui_3163 0.52 +0.7 3,391,021 - Dsui_3163 0.52 -0.3 3,391,049 + Dsui_3163 0.55 -1.9 3,391,062 + Dsui_3163 0.56 +0.2 3,391,072 + +0.7 3,391,188 - Dsui_3163 0.67 +0.7 3,391,221 - Dsui_3163 0.70 -0.3 3,391,278 - Dsui_3163 0.75 +0.7 3,391,333 + Dsui_3163 0.80 +0.3 3,391,371 + Dsui_3163 0.83 +0.8 3,391,389 + Dsui_3163 0.84 +2.1 3,391,421 - Dsui_3163 0.87 -0.9 3,391,568 - -0.9 3,391,643 - -1.9 3,391,685 + -0.3 3,391,911 - Dsui_3164 0.27 -0.1 3,391,961 + Dsui_3164 0.31 +0.7 3,392,018 + Dsui_3164 0.36 +0.7 3,392,080 + +0.7 3,392,152 + +0.7 3,392,162 + Dsui_3164 0.48 -0.9 3,392,372 + +0.7 3,392,398 - Dsui_3164 0.68 +0.1 3,392,398 - Dsui_3164 0.68 +0.7 3,392,470 - Dsui_3164 0.74 -0.3 3,392,515 + -0.3 3,392,554 - Dsui_3164 0.81 -0.5 3,392,565 - Dsui_3164 0.82 -0.3 3,392,565 - Dsui_3164 0.82 -1.3 3,392,565 - Dsui_3164 0.82 +0.7 3,392,565 - Dsui_3164 0.82 -0.3 3,392,582 - Dsui_3164 0.83 -0.3 3,392,722 + -0.3 3,392,753 + -0.3 3,392,768 + +0.7 3,392,771 - +0.7
Or see this region's nucleotide sequence