Strain Fitness in Dechlorosoma suillum PS around Dsui_3152

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3150 and Dsui_3151 are separated by 25 nucleotidesDsui_3151 and Dsui_3152 overlap by 4 nucleotidesDsui_3152 and Dsui_3153 are separated by 140 nucleotides Dsui_3150: Dsui_3150 - electron transfer flavoprotein, beta subunit, at 3,372,031 to 3,372,915 _3150 Dsui_3151: Dsui_3151 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,372,941 to 3,373,630 _3151 Dsui_3152: Dsui_3152 - histidine kinase, at 3,373,627 to 3,375,126 _3152 Dsui_3153: Dsui_3153 - TRAP transporter, DctM subunit, at 3,375,267 to 3,376,550 _3153 Position (kb) 3373 3374 3375 3376Strain fitness (log2 ratio) -2 -1 0 1at 3372.727 kb on - strand, within Dsui_3150at 3372.744 kb on + strand, within Dsui_3150at 3372.817 kb on - strand, within Dsui_3150at 3373.008 kb on - strandat 3373.045 kb on + strandat 3373.049 kb on - strand, within Dsui_3151at 3373.294 kb on - strand, within Dsui_3151at 3373.782 kb on - strand, within Dsui_3152at 3373.808 kb on - strandat 3373.871 kb on - strand, within Dsui_3152at 3373.909 kb on - strand, within Dsui_3152at 3373.958 kb on - strand, within Dsui_3152at 3374.074 kb on - strand, within Dsui_3152at 3374.141 kb on + strandat 3374.195 kb on + strandat 3374.251 kb on + strandat 3374.256 kb on + strandat 3374.258 kb on - strand, within Dsui_3152at 3374.259 kb on - strand, within Dsui_3152at 3374.304 kb on + strandat 3374.312 kb on - strand, within Dsui_3152at 3374.320 kb on + strandat 3374.340 kb on + strandat 3374.376 kb on + strandat 3374.431 kb on + strandat 3374.481 kb on - strand, within Dsui_3152at 3374.529 kb on - strand, within Dsui_3152at 3374.538 kb on - strand, within Dsui_3152at 3374.588 kb on - strand, within Dsui_3152at 3374.588 kb on - strand, within Dsui_3152at 3374.610 kb on - strandat 3374.756 kb on - strand, within Dsui_3152at 3374.797 kb on - strand, within Dsui_3152at 3374.958 kb on - strand, within Dsui_3152at 3375.080 kb on - strandat 3375.096 kb on + strandat 3375.160 kb on + strandat 3375.170 kb on + strandat 3375.231 kb on - strandat 3375.271 kb on + strandat 3375.282 kb on + strandat 3375.668 kb on + strand, within Dsui_3153at 3375.693 kb on - strand, within Dsui_3153at 3375.714 kb on + strand, within Dsui_3153at 3375.732 kb on - strand, within Dsui_3153at 3375.807 kb on + strand, within Dsui_3153at 3375.823 kb on - strand, within Dsui_3153at 3375.977 kb on + strand, within Dsui_3153

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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3,372,727 - Dsui_3150 0.79 -1.9
3,372,744 + Dsui_3150 0.81 -0.9
3,372,817 - Dsui_3150 0.89 -0.3
3,373,008 - +0.7
3,373,045 + -0.3
3,373,049 - Dsui_3151 0.16 +0.7
3,373,294 - Dsui_3151 0.51 -2.6
3,373,782 - Dsui_3152 0.10 +0.7
3,373,808 - +0.7
3,373,871 - Dsui_3152 0.16 -0.3
3,373,909 - Dsui_3152 0.19 +0.1
3,373,958 - Dsui_3152 0.22 -0.9
3,374,074 - Dsui_3152 0.30 +0.7
3,374,141 + -0.3
3,374,195 + +0.7
3,374,251 + -0.9
3,374,256 + -0.9
3,374,258 - Dsui_3152 0.42 +0.7
3,374,259 - Dsui_3152 0.42 +0.7
3,374,304 + -0.9
3,374,312 - Dsui_3152 0.46 +0.7
3,374,320 + +0.7
3,374,340 + -0.3
3,374,376 + -0.9
3,374,431 + -0.3
3,374,481 - Dsui_3152 0.57 -1.9
3,374,529 - Dsui_3152 0.60 +0.7
3,374,538 - Dsui_3152 0.61 -0.3
3,374,588 - Dsui_3152 0.64 -1.3
3,374,588 - Dsui_3152 0.64 +0.1
3,374,610 - +0.7
3,374,756 - Dsui_3152 0.75 -0.9
3,374,797 - Dsui_3152 0.78 -0.9
3,374,958 - Dsui_3152 0.89 -0.5
3,375,080 - -2.6
3,375,096 + +0.7
3,375,160 + -0.9
3,375,170 + -1.7
3,375,231 - -0.3
3,375,271 + +0.7
3,375,282 + -0.3
3,375,668 + Dsui_3153 0.31 +0.7
3,375,693 - Dsui_3153 0.33 -0.2
3,375,714 + Dsui_3153 0.35 -0.9
3,375,732 - Dsui_3153 0.36 +0.6
3,375,807 + Dsui_3153 0.42 -2.7
3,375,823 - Dsui_3153 0.43 +0.1
3,375,977 + Dsui_3153 0.55 +0.7

Or see this region's nucleotide sequence