Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3148 and Dsui_3149 are separated by 9 nucleotides Dsui_3149 and Dsui_3150 overlap by 8 nucleotides Dsui_3150 and Dsui_3151 are separated by 25 nucleotides
Dsui_3148: Dsui_3148 - flavin-dependent dehydrogenase, at 3,369,636 to 3,370,946
_3148
Dsui_3149: Dsui_3149 - electron transfer flavoprotein, alpha subunit, at 3,370,956 to 3,372,038
_3149
Dsui_3150: Dsui_3150 - electron transfer flavoprotein, beta subunit, at 3,372,031 to 3,372,915
_3150
Dsui_3151: Dsui_3151 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,372,941 to 3,373,630
_3151
Position (kb)
3370
3371
3372
3373 Strain fitness (log2 ratio)
-2
-1
0
1 at 3369.991 kb on - strand, within Dsui_3148 at 3369.991 kb on - strand, within Dsui_3148 at 3370.080 kb on + strand, within Dsui_3148 at 3370.110 kb on - strand, within Dsui_3148 at 3370.128 kb on + strand at 3370.191 kb on - strand, within Dsui_3148 at 3370.218 kb on + strand at 3370.226 kb on - strand, within Dsui_3148 at 3370.226 kb on - strand, within Dsui_3148 at 3370.257 kb on - strand, within Dsui_3148 at 3370.285 kb on + strand at 3370.531 kb on + strand at 3370.638 kb on - strand, within Dsui_3148 at 3370.869 kb on - strand at 3370.871 kb on + strand at 3370.935 kb on + strand at 3370.970 kb on - strand at 3370.995 kb on + strand at 3371.003 kb on - strand at 3371.205 kb on + strand at 3371.251 kb on + strand, within Dsui_3149 at 3371.306 kb on - strand, within Dsui_3149 at 3371.435 kb on + strand at 3371.438 kb on - strand, within Dsui_3149 at 3371.564 kb on - strand, within Dsui_3149 at 3371.663 kb on + strand at 3371.869 kb on - strand at 3371.900 kb on - strand, within Dsui_3149 at 3372.045 kb on + strand at 3372.070 kb on - strand at 3372.133 kb on - strand, within Dsui_3150 at 3372.135 kb on - strand at 3372.135 kb on - strand, within Dsui_3150 at 3372.157 kb on - strand, within Dsui_3150 at 3372.521 kb on - strand at 3372.523 kb on + strand at 3372.560 kb on + strand, within Dsui_3150 at 3372.727 kb on - strand, within Dsui_3150 at 3372.744 kb on + strand, within Dsui_3150 at 3372.817 kb on - strand, within Dsui_3150 at 3373.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 3,369,991 - Dsui_3148 0.27 +0.7 3,369,991 - Dsui_3148 0.27 +0.7 3,370,080 + Dsui_3148 0.34 +0.7 3,370,110 - Dsui_3148 0.36 -0.3 3,370,128 + +0.7 3,370,191 - Dsui_3148 0.42 -0.9 3,370,218 + -0.9 3,370,226 - Dsui_3148 0.45 +0.7 3,370,226 - Dsui_3148 0.45 -0.3 3,370,257 - Dsui_3148 0.47 -0.3 3,370,285 + +0.7 3,370,531 + -0.3 3,370,638 - Dsui_3148 0.76 -0.3 3,370,869 - -0.3 3,370,871 + -0.9 3,370,935 + -0.9 3,370,970 - -0.3 3,370,995 + -0.3 3,371,003 - +0.7 3,371,205 + +0.7 3,371,251 + Dsui_3149 0.27 -1.3 3,371,306 - Dsui_3149 0.32 -0.3 3,371,435 + -0.3 3,371,438 - Dsui_3149 0.45 -0.9 3,371,564 - Dsui_3149 0.56 -0.3 3,371,663 + -0.3 3,371,869 - +0.7 3,371,900 - Dsui_3149 0.87 -0.9 3,372,045 + -0.3 3,372,070 - +0.7 3,372,133 - Dsui_3150 0.12 +0.7 3,372,135 - +0.7 3,372,135 - Dsui_3150 0.12 +0.7 3,372,157 - Dsui_3150 0.14 -0.9 3,372,521 - +1.7 3,372,523 + -0.9 3,372,560 + Dsui_3150 0.60 -0.9 3,372,727 - Dsui_3150 0.79 -1.9 3,372,744 + Dsui_3150 0.81 -0.9 3,372,817 - Dsui_3150 0.89 -0.3 3,373,008 - +0.7
Or see this region's nucleotide sequence