Strain Fitness in Dechlorosoma suillum PS around Dsui_3149

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3148 and Dsui_3149 are separated by 9 nucleotidesDsui_3149 and Dsui_3150 overlap by 8 nucleotidesDsui_3150 and Dsui_3151 are separated by 25 nucleotides Dsui_3148: Dsui_3148 - flavin-dependent dehydrogenase, at 3,369,636 to 3,370,946 _3148 Dsui_3149: Dsui_3149 - electron transfer flavoprotein, alpha subunit, at 3,370,956 to 3,372,038 _3149 Dsui_3150: Dsui_3150 - electron transfer flavoprotein, beta subunit, at 3,372,031 to 3,372,915 _3150 Dsui_3151: Dsui_3151 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,372,941 to 3,373,630 _3151 Position (kb) 3370 3371 3372 3373Strain fitness (log2 ratio) -2 -1 0 1at 3369.991 kb on - strand, within Dsui_3148at 3369.991 kb on - strand, within Dsui_3148at 3370.080 kb on + strand, within Dsui_3148at 3370.110 kb on - strand, within Dsui_3148at 3370.128 kb on + strandat 3370.191 kb on - strand, within Dsui_3148at 3370.218 kb on + strandat 3370.226 kb on - strand, within Dsui_3148at 3370.226 kb on - strand, within Dsui_3148at 3370.257 kb on - strand, within Dsui_3148at 3370.285 kb on + strandat 3370.531 kb on + strandat 3370.638 kb on - strand, within Dsui_3148at 3370.869 kb on - strandat 3370.871 kb on + strandat 3370.935 kb on + strandat 3370.970 kb on - strandat 3370.995 kb on + strandat 3371.003 kb on - strandat 3371.205 kb on + strandat 3371.251 kb on + strand, within Dsui_3149at 3371.306 kb on - strand, within Dsui_3149at 3371.435 kb on + strandat 3371.438 kb on - strand, within Dsui_3149at 3371.564 kb on - strand, within Dsui_3149at 3371.663 kb on + strandat 3371.869 kb on - strandat 3371.900 kb on - strand, within Dsui_3149at 3372.045 kb on + strandat 3372.070 kb on - strandat 3372.133 kb on - strand, within Dsui_3150at 3372.135 kb on - strandat 3372.135 kb on - strand, within Dsui_3150at 3372.157 kb on - strand, within Dsui_3150at 3372.521 kb on - strandat 3372.523 kb on + strandat 3372.560 kb on + strand, within Dsui_3150at 3372.727 kb on - strand, within Dsui_3150at 3372.744 kb on + strand, within Dsui_3150at 3372.817 kb on - strand, within Dsui_3150at 3373.008 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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3,369,991 - Dsui_3148 0.27 +0.7
3,369,991 - Dsui_3148 0.27 +0.7
3,370,080 + Dsui_3148 0.34 +0.7
3,370,110 - Dsui_3148 0.36 -0.3
3,370,128 + +0.7
3,370,191 - Dsui_3148 0.42 -0.9
3,370,218 + -0.9
3,370,226 - Dsui_3148 0.45 +0.7
3,370,226 - Dsui_3148 0.45 -0.3
3,370,257 - Dsui_3148 0.47 -0.3
3,370,285 + +0.7
3,370,531 + -0.3
3,370,638 - Dsui_3148 0.76 -0.3
3,370,869 - -0.3
3,370,871 + -0.9
3,370,935 + -0.9
3,370,970 - -0.3
3,370,995 + -0.3
3,371,003 - +0.7
3,371,205 + +0.7
3,371,251 + Dsui_3149 0.27 -1.3
3,371,306 - Dsui_3149 0.32 -0.3
3,371,435 + -0.3
3,371,438 - Dsui_3149 0.45 -0.9
3,371,564 - Dsui_3149 0.56 -0.3
3,371,663 + -0.3
3,371,869 - +0.7
3,371,900 - Dsui_3149 0.87 -0.9
3,372,045 + -0.3
3,372,070 - +0.7
3,372,133 - Dsui_3150 0.12 +0.7
3,372,135 - +0.7
3,372,135 - Dsui_3150 0.12 +0.7
3,372,157 - Dsui_3150 0.14 -0.9
3,372,521 - +1.7
3,372,523 + -0.9
3,372,560 + Dsui_3150 0.60 -0.9
3,372,727 - Dsui_3150 0.79 -1.9
3,372,744 + Dsui_3150 0.81 -0.9
3,372,817 - Dsui_3150 0.89 -0.3
3,373,008 - +0.7

Or see this region's nucleotide sequence