Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3035 and Dsui_3036 are separated by 61 nucleotides Dsui_3036 and Dsui_3037 are separated by 85 nucleotides
Dsui_3035: Dsui_3035 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,249,849 to 3,251,012
_3035
Dsui_3036: Dsui_3036 - Zn-finger containing NTP pyrophosphohydrolase, at 3,251,074 to 3,251,643
_3036
Dsui_3037: Dsui_3037 - proton-translocating NADH-quinone oxidoreductase, chain N, at 3,251,729 to 3,253,207
_3037
Position (kb)
3251
3252 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3250.120 kb on + strand, within Dsui_3035 at 3250.338 kb on - strand, within Dsui_3035 at 3250.376 kb on + strand, within Dsui_3035 at 3250.457 kb on + strand, within Dsui_3035 at 3250.476 kb on - strand, within Dsui_3035 at 3250.487 kb on + strand, within Dsui_3035 at 3250.649 kb on + strand, within Dsui_3035 at 3250.649 kb on + strand, within Dsui_3035 at 3250.657 kb on - strand, within Dsui_3035 at 3250.741 kb on - strand, within Dsui_3035 at 3250.851 kb on - strand, within Dsui_3035 at 3251.026 kb on - strand at 3251.107 kb on + strand at 3251.142 kb on - strand, within Dsui_3036 at 3251.199 kb on - strand, within Dsui_3036 at 3251.246 kb on - strand, within Dsui_3036 at 3251.306 kb on - strand, within Dsui_3036 at 3251.494 kb on + strand, within Dsui_3036 at 3251.520 kb on + strand, within Dsui_3036 at 3251.550 kb on - strand, within Dsui_3036 at 3251.576 kb on + strand, within Dsui_3036 at 3251.584 kb on - strand, within Dsui_3036 at 3251.591 kb on + strand at 3251.594 kb on - strand at 3251.657 kb on - strand at 3251.659 kb on + strand at 3251.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 3,250,120 + Dsui_3035 0.23 -0.1 3,250,338 - Dsui_3035 0.42 -0.8 3,250,376 + Dsui_3035 0.45 +0.8 3,250,457 + Dsui_3035 0.52 +0.0 3,250,476 - Dsui_3035 0.54 -2.0 3,250,487 + Dsui_3035 0.55 +0.1 3,250,649 + Dsui_3035 0.69 +0.7 3,250,649 + Dsui_3035 0.69 +0.4 3,250,657 - Dsui_3035 0.69 +0.8 3,250,741 - Dsui_3035 0.77 -0.8 3,250,851 - Dsui_3035 0.86 -0.8 3,251,026 - -0.2 3,251,107 + -0.0 3,251,142 - Dsui_3036 0.12 +0.2 3,251,199 - Dsui_3036 0.22 +0.1 3,251,246 - Dsui_3036 0.30 +0.3 3,251,306 - Dsui_3036 0.41 -0.1 3,251,494 + Dsui_3036 0.74 +1.8 3,251,520 + Dsui_3036 0.78 -1.2 3,251,550 - Dsui_3036 0.84 +0.5 3,251,576 + Dsui_3036 0.88 +0.8 3,251,584 - Dsui_3036 0.89 +3.3 3,251,591 + +0.2 3,251,594 - +0.1 3,251,657 - +0.0 3,251,659 + +2.8 3,251,703 - +0.1
Or see this region's nucleotide sequence