Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2924 and Dsui_2925 are separated by 246 nucleotides Dsui_2925 and Dsui_2926 are separated by 98 nucleotides
Dsui_2924: Dsui_2924 - hypothetical protein, at 3,126,524 to 3,127,285
_2924
Dsui_2925: Dsui_2925 - propionate--CoA ligase, at 3,127,532 to 3,129,424
_2925
Dsui_2926: Dsui_2926 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,129,523 to 3,130,689
_2926
Position (kb)
3127
3128
3129
3130 Strain fitness (log2 ratio)
-2
-1
0
1 at 3126.619 kb on - strand, within Dsui_2924 at 3126.775 kb on - strand at 3126.942 kb on - strand, within Dsui_2924 at 3127.041 kb on + strand, within Dsui_2924 at 3127.548 kb on + strand at 3127.556 kb on - strand at 3127.556 kb on - strand at 3127.556 kb on - strand at 3127.785 kb on + strand, within Dsui_2925 at 3127.793 kb on - strand, within Dsui_2925 at 3127.840 kb on - strand, within Dsui_2925 at 3127.869 kb on - strand, within Dsui_2925 at 3127.874 kb on - strand, within Dsui_2925 at 3127.943 kb on + strand at 3127.995 kb on + strand, within Dsui_2925 at 3128.010 kb on + strand, within Dsui_2925 at 3128.018 kb on - strand, within Dsui_2925 at 3128.020 kb on + strand, within Dsui_2925 at 3128.117 kb on - strand, within Dsui_2925 at 3128.173 kb on - strand, within Dsui_2925 at 3128.188 kb on - strand, within Dsui_2925 at 3128.209 kb on + strand, within Dsui_2925 at 3128.233 kb on + strand, within Dsui_2925 at 3128.247 kb on + strand at 3128.292 kb on + strand, within Dsui_2925 at 3128.300 kb on - strand, within Dsui_2925 at 3128.342 kb on - strand, within Dsui_2925 at 3128.352 kb on + strand, within Dsui_2925 at 3128.434 kb on + strand, within Dsui_2925 at 3128.439 kb on + strand, within Dsui_2925 at 3128.544 kb on + strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.580 kb on - strand, within Dsui_2925 at 3128.588 kb on - strand, within Dsui_2925 at 3128.610 kb on + strand at 3128.658 kb on + strand, within Dsui_2925 at 3128.666 kb on - strand, within Dsui_2925 at 3128.673 kb on + strand, within Dsui_2925 at 3128.681 kb on - strand, within Dsui_2925 at 3128.700 kb on + strand, within Dsui_2925 at 3128.825 kb on - strand, within Dsui_2925 at 3128.956 kb on + strand at 3129.049 kb on - strand, within Dsui_2925 at 3129.167 kb on + strand at 3129.176 kb on - strand, within Dsui_2925 at 3129.221 kb on - strand, within Dsui_2925 at 3129.269 kb on + strand at 3129.309 kb on - strand at 3129.309 kb on - strand at 3129.323 kb on - strand at 3129.359 kb on - strand at 3129.409 kb on + strand at 3129.409 kb on - strand at 3129.417 kb on - strand at 3129.439 kb on - strand at 3129.454 kb on + strand at 3129.454 kb on + strand at 3129.456 kb on + strand at 3129.464 kb on - strand at 3129.489 kb on + strand at 3129.508 kb on - strand at 3129.561 kb on - strand at 3129.561 kb on - strand at 3129.561 kb on - strand at 3129.561 kb on - strand at 3129.562 kb on - strand at 3129.607 kb on - strand at 3129.646 kb on + strand, within Dsui_2926 at 3129.658 kb on + strand at 3129.661 kb on - strand, within Dsui_2926 at 3129.721 kb on - strand, within Dsui_2926 at 3129.721 kb on - strand, within Dsui_2926 at 3129.721 kb on - strand at 3129.833 kb on + strand, within Dsui_2926 at 3129.863 kb on + strand at 3129.976 kb on - strand, within Dsui_2926 at 3129.995 kb on - strand, within Dsui_2926 at 3130.019 kb on - strand, within Dsui_2926 at 3130.023 kb on + strand at 3130.125 kb on - strand, within Dsui_2926 at 3130.223 kb on + strand at 3130.242 kb on - strand, within Dsui_2926
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 3,126,619 - Dsui_2924 0.12 +0.8 3,126,775 - -0.2 3,126,942 - Dsui_2924 0.55 -0.2 3,127,041 + Dsui_2924 0.68 -0.8 3,127,548 + +0.8 3,127,556 - -0.1 3,127,556 - +1.2 3,127,556 - -0.1 3,127,785 + Dsui_2925 0.13 -0.2 3,127,793 - Dsui_2925 0.14 +1.1 3,127,840 - Dsui_2925 0.16 +0.2 3,127,869 - Dsui_2925 0.18 -0.2 3,127,874 - Dsui_2925 0.18 +0.0 3,127,943 + -0.2 3,127,995 + Dsui_2925 0.24 -0.8 3,128,010 + Dsui_2925 0.25 -0.2 3,128,018 - Dsui_2925 0.26 +0.1 3,128,020 + Dsui_2925 0.26 -0.2 3,128,117 - Dsui_2925 0.31 -0.1 3,128,173 - Dsui_2925 0.34 -0.6 3,128,188 - Dsui_2925 0.35 +0.0 3,128,209 + Dsui_2925 0.36 -1.8 3,128,233 + Dsui_2925 0.37 -0.2 3,128,247 + +0.8 3,128,292 + Dsui_2925 0.40 +0.8 3,128,300 - Dsui_2925 0.41 +0.8 3,128,342 - Dsui_2925 0.43 -0.3 3,128,352 + Dsui_2925 0.43 -0.2 3,128,434 + Dsui_2925 0.48 -1.5 3,128,439 + Dsui_2925 0.48 -0.2 3,128,544 + Dsui_2925 0.53 +0.8 3,128,552 - Dsui_2925 0.54 +0.7 3,128,552 - Dsui_2925 0.54 -0.0 3,128,552 - Dsui_2925 0.54 +0.5 3,128,552 - Dsui_2925 0.54 -0.2 3,128,580 - Dsui_2925 0.55 -0.4 3,128,588 - Dsui_2925 0.56 +0.8 3,128,610 + +0.8 3,128,658 + Dsui_2925 0.59 -0.8 3,128,666 - Dsui_2925 0.60 +0.4 3,128,673 + Dsui_2925 0.60 -1.8 3,128,681 - Dsui_2925 0.61 +0.8 3,128,700 + Dsui_2925 0.62 -2.0 3,128,825 - Dsui_2925 0.68 -0.6 3,128,956 + +0.8 3,129,049 - Dsui_2925 0.80 +0.5 3,129,167 + -0.2 3,129,176 - Dsui_2925 0.87 -0.3 3,129,221 - Dsui_2925 0.89 -0.0 3,129,269 + +0.8 3,129,309 - +0.4 3,129,309 - -0.2 3,129,323 - -0.0 3,129,359 - -0.6 3,129,409 + +0.8 3,129,409 - -0.3 3,129,417 - +0.3 3,129,439 - -0.5 3,129,454 + -0.8 3,129,454 + -0.2 3,129,456 + +0.8 3,129,464 - -0.7 3,129,489 + +0.8 3,129,508 - -0.0 3,129,561 - -0.2 3,129,561 - -0.3 3,129,561 - -0.1 3,129,561 - +0.3 3,129,562 - -0.4 3,129,607 - +0.6 3,129,646 + Dsui_2926 0.11 -1.2 3,129,658 + -1.2 3,129,661 - Dsui_2926 0.12 +0.3 3,129,721 - Dsui_2926 0.17 -0.8 3,129,721 - Dsui_2926 0.17 +0.3 3,129,721 - -0.2 3,129,833 + Dsui_2926 0.27 -1.5 3,129,863 + -1.2 3,129,976 - Dsui_2926 0.39 +0.4 3,129,995 - Dsui_2926 0.40 +0.7 3,130,019 - Dsui_2926 0.43 +0.2 3,130,023 + +0.8 3,130,125 - Dsui_2926 0.52 -0.1 3,130,223 + +0.8 3,130,242 - Dsui_2926 0.62 +0.5
Or see this region's nucleotide sequence