Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2898 and Dsui_2899 are separated by 42 nucleotides Dsui_2899 and Dsui_2900 overlap by 4 nucleotides
Dsui_2898: Dsui_2898 - yjeF-like protein, hydroxyethylthiazole kinase-related protein, at 3,100,605 to 3,102,113
_2898
Dsui_2899: Dsui_2899 - putative permease, DMT superfamily, at 3,102,156 to 3,103,034
_2899
Dsui_2900: Dsui_2900 - glutamate synthase family protein, at 3,103,031 to 3,104,515
_2900
Position (kb)
3102
3103
3104 Strain fitness (log2 ratio)
-2
-1
0
1 at 3101.181 kb on - strand at 3101.506 kb on - strand at 3101.702 kb on + strand at 3101.825 kb on - strand at 3101.970 kb on + strand at 3102.045 kb on - strand at 3102.224 kb on + strand at 3102.236 kb on + strand at 3102.270 kb on + strand, within Dsui_2899 at 3102.333 kb on - strand at 3102.344 kb on - strand at 3102.433 kb on + strand, within Dsui_2899 at 3102.479 kb on + strand, within Dsui_2899 at 3102.581 kb on + strand, within Dsui_2899 at 3102.618 kb on + strand, within Dsui_2899 at 3102.618 kb on + strand, within Dsui_2899 at 3102.620 kb on - strand at 3102.623 kb on + strand, within Dsui_2899 at 3102.643 kb on + strand, within Dsui_2899 at 3102.724 kb on - strand at 3102.787 kb on + strand, within Dsui_2899 at 3102.795 kb on - strand at 3102.797 kb on - strand, within Dsui_2899 at 3102.800 kb on - strand at 3103.050 kb on + strand at 3103.203 kb on + strand, within Dsui_2900 at 3103.211 kb on - strand, within Dsui_2900 at 3103.312 kb on + strand, within Dsui_2900 at 3103.320 kb on - strand, within Dsui_2900 at 3103.520 kb on + strand, within Dsui_2900 at 3103.961 kb on - strand, within Dsui_2900 at 3103.992 kb on - strand, within Dsui_2900 at 3104.030 kb on + strand at 3104.032 kb on - strand, within Dsui_2900
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 3,101,181 - -0.8 3,101,506 - -0.2 3,101,702 + +0.8 3,101,825 - +0.8 3,101,970 + +0.5 3,102,045 - -0.8 3,102,224 + -0.4 3,102,236 + -0.1 3,102,270 + Dsui_2899 0.13 +0.2 3,102,333 - -0.2 3,102,344 - +0.8 3,102,433 + Dsui_2899 0.32 -0.9 3,102,479 + Dsui_2899 0.37 -0.1 3,102,581 + Dsui_2899 0.48 -0.4 3,102,618 + Dsui_2899 0.53 -1.0 3,102,618 + Dsui_2899 0.53 -1.7 3,102,620 - +0.8 3,102,623 + Dsui_2899 0.53 +0.2 3,102,643 + Dsui_2899 0.55 -0.4 3,102,724 - +0.8 3,102,787 + Dsui_2899 0.72 -0.4 3,102,795 - +0.8 3,102,797 - Dsui_2899 0.73 -0.2 3,102,800 - -0.2 3,103,050 + -0.0 3,103,203 + Dsui_2900 0.12 -0.4 3,103,211 - Dsui_2900 0.12 -0.8 3,103,312 + Dsui_2900 0.19 +1.2 3,103,320 - Dsui_2900 0.19 -1.8 3,103,520 + Dsui_2900 0.33 -1.2 3,103,961 - Dsui_2900 0.63 +0.8 3,103,992 - Dsui_2900 0.65 -1.2 3,104,030 + +0.8 3,104,032 - Dsui_2900 0.67 -0.8
Or see this region's nucleotide sequence