Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2888 and Dsui_2889 are separated by 42 nucleotides Dsui_2889 and Dsui_2890 are separated by 53 nucleotides Dsui_2890 and Dsui_2891 are separated by 21 nucleotides Dsui_2891 and Dsui_2892 are separated by 86 nucleotides
Dsui_2888: Dsui_2888 - stress-induced morphogen, at 3,085,006 to 3,085,278
_2888
Dsui_2889: Dsui_2889 - parvulin-like peptidyl-prolyl isomerase, at 3,085,321 to 3,086,121
_2889
Dsui_2890: Dsui_2890 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,086,175 to 3,088,103
_2890
Dsui_2891: Dsui_2891 - hemerythrin-like metal-binding domain-containing protein, at 3,088,125 to 3,088,532
_2891
Dsui_2892: Dsui_2892 - phosphoribosylformylglycinamidine synthase, single chain form, at 3,088,619 to 3,092,596
_2892
Position (kb)
3086
3087
3088
3089 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3085.269 kb on - strand at 3085.305 kb on + strand at 3085.373 kb on - strand at 3085.478 kb on + strand, within Dsui_2889 at 3085.630 kb on + strand, within Dsui_2889 at 3085.718 kb on - strand, within Dsui_2889 at 3085.745 kb on - strand at 3085.826 kb on + strand, within Dsui_2889 at 3085.870 kb on + strand, within Dsui_2889 at 3086.024 kb on + strand, within Dsui_2889 at 3086.024 kb on + strand, within Dsui_2889 at 3086.034 kb on + strand, within Dsui_2889 at 3086.357 kb on + strand at 3086.365 kb on - strand at 3086.404 kb on + strand at 3086.468 kb on - strand, within Dsui_2890 at 3086.640 kb on + strand, within Dsui_2890 at 3086.648 kb on - strand, within Dsui_2890 at 3086.659 kb on + strand, within Dsui_2890 at 3086.748 kb on - strand, within Dsui_2890 at 3086.770 kb on - strand, within Dsui_2890 at 3086.808 kb on - strand at 3086.823 kb on + strand, within Dsui_2890 at 3086.826 kb on - strand, within Dsui_2890 at 3086.857 kb on + strand, within Dsui_2890 at 3086.890 kb on + strand, within Dsui_2890 at 3087.017 kb on - strand, within Dsui_2890 at 3087.166 kb on - strand, within Dsui_2890 at 3087.225 kb on - strand, within Dsui_2890 at 3087.490 kb on + strand, within Dsui_2890 at 3087.498 kb on - strand, within Dsui_2890 at 3087.714 kb on - strand, within Dsui_2890 at 3087.778 kb on + strand, within Dsui_2890 at 3087.873 kb on + strand, within Dsui_2890 at 3087.942 kb on + strand at 3087.983 kb on - strand at 3088.067 kb on + strand at 3088.080 kb on - strand at 3088.143 kb on - strand at 3088.144 kb on - strand at 3088.229 kb on + strand, within Dsui_2891 at 3088.420 kb on + strand, within Dsui_2891 at 3088.444 kb on + strand, within Dsui_2891 at 3088.449 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 3,085,269 - +0.8 3,085,305 + -3.4 3,085,373 - -0.2 3,085,478 + Dsui_2889 0.20 -3.3 3,085,630 + Dsui_2889 0.39 -3.1 3,085,718 - Dsui_2889 0.50 +0.8 3,085,745 - -0.2 3,085,826 + Dsui_2889 0.63 -2.8 3,085,870 + Dsui_2889 0.69 -4.0 3,086,024 + Dsui_2889 0.88 -3.0 3,086,024 + Dsui_2889 0.88 -4.6 3,086,034 + Dsui_2889 0.89 -3.5 3,086,357 + +0.8 3,086,365 - -0.2 3,086,404 + +0.8 3,086,468 - Dsui_2890 0.15 -0.8 3,086,640 + Dsui_2890 0.24 -1.5 3,086,648 - Dsui_2890 0.25 +0.8 3,086,659 + Dsui_2890 0.25 -1.5 3,086,748 - Dsui_2890 0.30 +0.8 3,086,770 - Dsui_2890 0.31 -1.2 3,086,808 - +0.8 3,086,823 + Dsui_2890 0.34 -1.2 3,086,826 - Dsui_2890 0.34 -0.8 3,086,857 + Dsui_2890 0.35 -0.2 3,086,890 + Dsui_2890 0.37 +0.8 3,087,017 - Dsui_2890 0.44 +0.8 3,087,166 - Dsui_2890 0.51 -0.2 3,087,225 - Dsui_2890 0.54 -0.2 3,087,490 + Dsui_2890 0.68 -1.5 3,087,498 - Dsui_2890 0.69 +0.8 3,087,714 - Dsui_2890 0.80 -0.2 3,087,778 + Dsui_2890 0.83 -0.2 3,087,873 + Dsui_2890 0.88 -0.2 3,087,942 + -2.5 3,087,983 - -2.4 3,088,067 + -0.8 3,088,080 - -0.4 3,088,143 - -0.2 3,088,144 - +0.2 3,088,229 + Dsui_2891 0.25 +0.8 3,088,420 + Dsui_2891 0.72 +0.8 3,088,444 + Dsui_2891 0.78 +0.8 3,088,449 + +0.8
Or see this region's nucleotide sequence