Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2708 and Dsui_2709 are separated by 22 nucleotides Dsui_2709 and Dsui_2710 are separated by 59 nucleotides Dsui_2710 and Dsui_2711 are separated by 22 nucleotides
Dsui_2708: Dsui_2708 - succinyldiaminopimelate transaminase, at 2,864,527 to 2,865,732
_2708
Dsui_2709: Dsui_2709 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,865,755 to 2,866,573
_2709
Dsui_2710: Dsui_2710 - pilus retraction protein PilT, at 2,866,633 to 2,867,814
_2710
Dsui_2711: Dsui_2711 - succinyl-diaminopimelate desuccinylase, at 2,867,837 to 2,868,988
_2711
Position (kb)
2866
2867
2868 Strain fitness (log2 ratio)
-2
-1
0
1 at 2865.709 kb on - strand at 2865.726 kb on + strand at 2865.727 kb on + strand at 2866.577 kb on + strand at 2866.582 kb on + strand at 2866.650 kb on + strand at 2866.794 kb on + strand, within Dsui_2710 at 2866.802 kb on - strand, within Dsui_2710 at 2866.817 kb on + strand, within Dsui_2710 at 2866.834 kb on + strand, within Dsui_2710 at 2866.920 kb on - strand, within Dsui_2710 at 2866.953 kb on - strand at 2866.955 kb on + strand, within Dsui_2710 at 2866.955 kb on + strand, within Dsui_2710 at 2866.955 kb on + strand, within Dsui_2710 at 2866.955 kb on + strand, within Dsui_2710 at 2867.094 kb on + strand, within Dsui_2710 at 2867.202 kb on - strand, within Dsui_2710 at 2867.272 kb on + strand, within Dsui_2710 at 2867.272 kb on + strand, within Dsui_2710 at 2867.272 kb on + strand, within Dsui_2710 at 2867.285 kb on - strand, within Dsui_2710 at 2867.417 kb on - strand, within Dsui_2710 at 2867.498 kb on + strand, within Dsui_2710 at 2867.508 kb on + strand, within Dsui_2710 at 2867.539 kb on - strand at 2867.541 kb on + strand, within Dsui_2710 at 2867.584 kb on - strand, within Dsui_2710 at 2867.642 kb on + strand, within Dsui_2710 at 2867.659 kb on + strand, within Dsui_2710 at 2867.823 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 2,865,709 - +0.8 2,865,726 + -0.3 2,865,727 + -0.5 2,866,577 + -0.4 2,866,582 + -0.1 2,866,650 + +0.1 2,866,794 + Dsui_2710 0.14 -0.3 2,866,802 - Dsui_2710 0.14 +0.8 2,866,817 + Dsui_2710 0.16 -0.7 2,866,834 + Dsui_2710 0.17 -0.2 2,866,920 - Dsui_2710 0.24 +0.8 2,866,953 - -0.2 2,866,955 + Dsui_2710 0.27 -0.7 2,866,955 + Dsui_2710 0.27 -0.1 2,866,955 + Dsui_2710 0.27 +0.2 2,866,955 + Dsui_2710 0.27 -0.0 2,867,094 + Dsui_2710 0.39 +0.3 2,867,202 - Dsui_2710 0.48 -2.5 2,867,272 + Dsui_2710 0.54 +0.0 2,867,272 + Dsui_2710 0.54 +0.1 2,867,272 + Dsui_2710 0.54 +0.6 2,867,285 - Dsui_2710 0.55 -0.2 2,867,417 - Dsui_2710 0.66 -1.5 2,867,498 + Dsui_2710 0.73 -0.6 2,867,508 + Dsui_2710 0.74 +0.1 2,867,539 - +0.8 2,867,541 + Dsui_2710 0.77 -1.1 2,867,584 - Dsui_2710 0.80 +0.8 2,867,642 + Dsui_2710 0.85 -0.5 2,867,659 + Dsui_2710 0.87 -0.2 2,867,823 + +0.3
Or see this region's nucleotide sequence