Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2658 and Dsui_2659 are separated by 329 nucleotides Dsui_2659 and Dsui_2660 are separated by 114 nucleotides Dsui_2660 and Dsui_2661 overlap by 4 nucleotides
Dsui_2658: Dsui_2658 - hypothetical protein, at 2,813,441 to 2,814,190
_2658
Dsui_2659: Dsui_2659 - cold shock protein, at 2,814,520 to 2,814,723
_2659
Dsui_2660: Dsui_2660 - hypothetical protein, at 2,814,838 to 2,815,320
_2660
Dsui_2661: Dsui_2661 - cytosine/adenosine deaminase, at 2,815,317 to 2,815,778
_2661
Position (kb)
2814
2815 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2813.644 kb on + strand, within Dsui_2658 at 2813.646 kb on + strand, within Dsui_2658 at 2813.766 kb on + strand, within Dsui_2658 at 2813.850 kb on + strand, within Dsui_2658 at 2813.886 kb on + strand, within Dsui_2658 at 2813.889 kb on - strand, within Dsui_2658 at 2813.946 kb on + strand, within Dsui_2658 at 2813.959 kb on - strand, within Dsui_2658 at 2814.004 kb on + strand, within Dsui_2658 at 2814.055 kb on - strand at 2814.062 kb on + strand, within Dsui_2658 at 2814.120 kb on + strand at 2814.193 kb on - strand at 2814.223 kb on + strand at 2814.351 kb on + strand at 2814.351 kb on + strand at 2814.352 kb on + strand at 2814.353 kb on + strand at 2814.362 kb on - strand at 2814.380 kb on + strand at 2814.380 kb on + strand at 2814.380 kb on + strand at 2814.388 kb on - strand at 2814.420 kb on + strand at 2814.420 kb on + strand at 2814.425 kb on + strand at 2814.428 kb on - strand at 2814.428 kb on - strand at 2814.428 kb on - strand at 2814.430 kb on + strand at 2814.430 kb on + strand at 2814.433 kb on - strand at 2814.433 kb on - strand at 2814.433 kb on - strand at 2814.438 kb on + strand at 2814.438 kb on + strand at 2814.438 kb on + strand at 2814.438 kb on + strand at 2814.438 kb on - strand at 2814.438 kb on - strand at 2814.443 kb on + strand at 2814.443 kb on + strand at 2814.446 kb on - strand at 2814.446 kb on - strand at 2814.457 kb on + strand at 2814.465 kb on - strand at 2814.474 kb on + strand at 2814.474 kb on + strand at 2814.482 kb on - strand at 2814.482 kb on - strand at 2814.533 kb on + strand at 2814.533 kb on + strand at 2814.533 kb on + strand at 2814.533 kb on - strand at 2814.559 kb on + strand, within Dsui_2659 at 2814.579 kb on + strand, within Dsui_2659 at 2814.587 kb on - strand at 2814.587 kb on - strand at 2814.590 kb on + strand, within Dsui_2659 at 2814.677 kb on + strand, within Dsui_2659 at 2814.682 kb on + strand, within Dsui_2659 at 2814.682 kb on + strand, within Dsui_2659 at 2814.682 kb on + strand, within Dsui_2659 at 2814.699 kb on + strand, within Dsui_2659 at 2814.716 kb on - strand at 2814.718 kb on + strand at 2814.718 kb on + strand at 2814.726 kb on - strand at 2814.816 kb on + strand at 2814.821 kb on + strand at 2814.824 kb on - strand at 2814.829 kb on - strand at 2814.830 kb on - strand at 2814.843 kb on - strand at 2814.851 kb on - strand at 2815.330 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 2,813,644 + Dsui_2658 0.27 +0.1 2,813,646 + Dsui_2658 0.27 +0.2 2,813,766 + Dsui_2658 0.43 +0.6 2,813,850 + Dsui_2658 0.55 +0.5 2,813,886 + Dsui_2658 0.59 +0.0 2,813,889 - Dsui_2658 0.60 +0.7 2,813,946 + Dsui_2658 0.67 -0.3 2,813,959 - Dsui_2658 0.69 -0.3 2,814,004 + Dsui_2658 0.75 +0.1 2,814,055 - +0.7 2,814,062 + Dsui_2658 0.83 -0.1 2,814,120 + -1.3 2,814,193 - -0.3 2,814,223 + -0.3 2,814,351 + +1.9 2,814,351 + -0.3 2,814,352 + +0.7 2,814,353 + +0.7 2,814,362 - -1.3 2,814,380 + +0.2 2,814,380 + -0.5 2,814,380 + +0.4 2,814,388 - -0.9 2,814,420 + -0.4 2,814,420 + +0.3 2,814,425 + -0.1 2,814,428 - -0.9 2,814,428 - -1.3 2,814,428 - +0.7 2,814,430 + +0.0 2,814,430 + -0.2 2,814,433 - -0.9 2,814,433 - +0.7 2,814,433 - -0.3 2,814,438 + -0.2 2,814,438 + -0.3 2,814,438 + -0.3 2,814,438 + -0.2 2,814,438 - +0.7 2,814,438 - +0.7 2,814,443 + -0.3 2,814,443 + +0.4 2,814,446 - +0.7 2,814,446 - +0.7 2,814,457 + -0.1 2,814,465 - +0.7 2,814,474 + -0.4 2,814,474 + -0.2 2,814,482 - +0.7 2,814,482 - -0.3 2,814,533 + +0.1 2,814,533 + -0.2 2,814,533 + -0.4 2,814,533 - -0.3 2,814,559 + Dsui_2659 0.19 -0.1 2,814,579 + Dsui_2659 0.29 -0.1 2,814,587 - -0.3 2,814,587 - +0.7 2,814,590 + Dsui_2659 0.34 -0.3 2,814,677 + Dsui_2659 0.77 -0.4 2,814,682 + Dsui_2659 0.79 +0.4 2,814,682 + Dsui_2659 0.79 +0.4 2,814,682 + Dsui_2659 0.79 +0.1 2,814,699 + Dsui_2659 0.88 +0.0 2,814,716 - -0.3 2,814,718 + -0.3 2,814,718 + -0.4 2,814,726 - +0.7 2,814,816 + -2.6 2,814,821 + +0.7 2,814,824 - +0.5 2,814,829 - +0.3 2,814,830 - -0.5 2,814,843 - +0.0 2,814,851 - +0.2 2,815,330 + -0.3
Or see this region's nucleotide sequence