Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2346 and Dsui_2347 are separated by 396 nucleotides Dsui_2347 and Dsui_2348 are separated by 202 nucleotides Dsui_2348 and Dsui_2349 are separated by 294 nucleotides
Dsui_2346: Dsui_2346 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 2,497,017 to 2,498,384
_2346
Dsui_2347: Dsui_2347 - aconitate hydratase 1, at 2,498,781 to 2,501,477
_2347
Dsui_2348: Dsui_2348 - hypothetical protein, at 2,501,680 to 2,502,048
_2348
Dsui_2349: Dsui_2349 - Zn-dependent hydrolase, glyoxylase, at 2,502,343 to 2,503,311
_2349
Position (kb)
2498
2499
2500
2501
2502 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2497.834 kb on - strand, within Dsui_2346 at 2497.895 kb on + strand at 2497.903 kb on - strand, within Dsui_2346 at 2498.327 kb on - strand at 2498.346 kb on - strand at 2498.346 kb on - strand at 2498.361 kb on + strand at 2498.417 kb on - strand at 2498.417 kb on - strand at 2498.417 kb on - strand at 2498.417 kb on - strand at 2498.417 kb on - strand at 2498.430 kb on + strand at 2498.442 kb on + strand at 2498.467 kb on - strand at 2498.499 kb on + strand at 2498.507 kb on - strand at 2498.507 kb on - strand at 2498.507 kb on - strand at 2498.507 kb on - strand at 2498.512 kb on - strand at 2498.512 kb on - strand at 2498.538 kb on + strand at 2498.595 kb on - strand at 2498.595 kb on - strand at 2498.620 kb on - strand at 2498.620 kb on - strand at 2498.680 kb on - strand at 2498.680 kb on - strand at 2498.680 kb on - strand at 2498.680 kb on - strand at 2498.811 kb on - strand at 2498.840 kb on - strand at 2498.840 kb on - strand at 2498.886 kb on - strand at 2498.886 kb on - strand at 2498.930 kb on - strand at 2498.941 kb on - strand at 2498.941 kb on - strand at 2498.950 kb on - strand at 2499.030 kb on - strand at 2499.134 kb on + strand at 2499.175 kb on - strand, within Dsui_2347 at 2499.201 kb on - strand, within Dsui_2347 at 2499.244 kb on - strand, within Dsui_2347 at 2499.244 kb on - strand, within Dsui_2347 at 2499.328 kb on + strand at 2499.329 kb on - strand, within Dsui_2347 at 2499.419 kb on + strand at 2499.451 kb on + strand at 2499.526 kb on - strand, within Dsui_2347 at 2499.558 kb on + strand at 2499.581 kb on - strand, within Dsui_2347 at 2499.581 kb on - strand, within Dsui_2347 at 2499.622 kb on - strand, within Dsui_2347 at 2499.637 kb on + strand at 2499.663 kb on + strand at 2499.695 kb on + strand at 2499.703 kb on - strand at 2499.723 kb on + strand, within Dsui_2347 at 2499.730 kb on - strand, within Dsui_2347 at 2499.783 kb on - strand, within Dsui_2347 at 2499.913 kb on + strand, within Dsui_2347 at 2500.049 kb on + strand at 2500.072 kb on + strand, within Dsui_2347 at 2500.083 kb on + strand at 2500.083 kb on + strand, within Dsui_2347 at 2500.091 kb on - strand, within Dsui_2347 at 2500.107 kb on - strand, within Dsui_2347 at 2500.151 kb on + strand at 2500.211 kb on - strand at 2500.290 kb on + strand at 2500.346 kb on - strand, within Dsui_2347 at 2500.357 kb on - strand, within Dsui_2347 at 2500.362 kb on - strand, within Dsui_2347 at 2500.399 kb on - strand, within Dsui_2347 at 2500.612 kb on - strand, within Dsui_2347 at 2500.644 kb on - strand, within Dsui_2347 at 2500.649 kb on + strand at 2500.708 kb on + strand at 2500.732 kb on + strand at 2500.735 kb on - strand, within Dsui_2347 at 2500.742 kb on + strand at 2500.750 kb on - strand, within Dsui_2347 at 2500.841 kb on - strand, within Dsui_2347 at 2500.851 kb on - strand, within Dsui_2347 at 2500.863 kb on - strand, within Dsui_2347 at 2500.916 kb on - strand, within Dsui_2347 at 2500.928 kb on + strand at 2500.961 kb on + strand at 2500.969 kb on - strand, within Dsui_2347 at 2500.969 kb on - strand, within Dsui_2347 at 2501.027 kb on - strand, within Dsui_2347 at 2501.054 kb on - strand, within Dsui_2347 at 2501.076 kb on + strand at 2501.089 kb on - strand, within Dsui_2347 at 2501.522 kb on - strand at 2501.655 kb on + strand at 2501.663 kb on - strand at 2501.663 kb on - strand at 2501.725 kb on - strand, within Dsui_2348 at 2501.731 kb on - strand, within Dsui_2348 at 2501.769 kb on - strand at 2501.770 kb on - strand, within Dsui_2348 at 2501.780 kb on - strand, within Dsui_2348 at 2501.809 kb on - strand, within Dsui_2348 at 2501.895 kb on + strand at 2502.038 kb on - strand at 2502.038 kb on - strand at 2502.140 kb on + strand at 2502.216 kb on - strand at 2502.317 kb on - strand at 2502.319 kb on - strand at 2502.334 kb on + strand at 2502.397 kb on - strand at 2502.436 kb on - strand at 2502.436 kb on - strand at 2502.461 kb on - strand, within Dsui_2349
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 2,497,834 - Dsui_2346 0.60 +0.3 2,497,895 + -0.9 2,497,903 - Dsui_2346 0.65 -0.3 2,498,327 - -1.2 2,498,346 - +2.7 2,498,346 - +0.1 2,498,361 + -0.3 2,498,417 - +1.0 2,498,417 - +0.7 2,498,417 - -0.8 2,498,417 - -0.6 2,498,417 - -1.1 2,498,430 + -1.9 2,498,442 + -0.9 2,498,467 - -1.3 2,498,499 + -0.3 2,498,507 - +0.7 2,498,507 - -1.3 2,498,507 - -0.9 2,498,507 - -2.1 2,498,512 - -0.9 2,498,512 - -0.9 2,498,538 + -0.9 2,498,595 - -0.3 2,498,595 - -0.9 2,498,620 - -0.3 2,498,620 - +0.7 2,498,680 - -2.8 2,498,680 - -0.9 2,498,680 - -0.3 2,498,680 - +0.7 2,498,811 - +3.5 2,498,840 - -0.8 2,498,840 - -1.3 2,498,886 - -0.9 2,498,886 - +0.7 2,498,930 - -3.1 2,498,941 - -0.3 2,498,941 - -0.9 2,498,950 - -0.3 2,499,030 - -0.6 2,499,134 + +0.7 2,499,175 - Dsui_2347 0.15 -0.9 2,499,201 - Dsui_2347 0.16 -2.5 2,499,244 - Dsui_2347 0.17 -1.3 2,499,244 - Dsui_2347 0.17 +0.7 2,499,328 + +0.7 2,499,329 - Dsui_2347 0.20 +1.7 2,499,419 + -0.9 2,499,451 + +0.7 2,499,526 - Dsui_2347 0.28 -0.3 2,499,558 + +0.7 2,499,581 - Dsui_2347 0.30 -2.5 2,499,581 - Dsui_2347 0.30 +0.4 2,499,622 - Dsui_2347 0.31 -0.7 2,499,637 + +0.7 2,499,663 + -1.3 2,499,695 + +0.7 2,499,703 - -0.9 2,499,723 + Dsui_2347 0.35 -1.3 2,499,730 - Dsui_2347 0.35 +0.7 2,499,783 - Dsui_2347 0.37 -0.9 2,499,913 + Dsui_2347 0.42 -0.9 2,500,049 + +0.7 2,500,072 + Dsui_2347 0.48 -0.9 2,500,083 + -0.3 2,500,083 + Dsui_2347 0.48 -2.3 2,500,091 - Dsui_2347 0.49 -1.6 2,500,107 - Dsui_2347 0.49 -0.9 2,500,151 + -0.3 2,500,211 - +0.7 2,500,290 + +0.7 2,500,346 - Dsui_2347 0.58 -1.3 2,500,357 - Dsui_2347 0.58 -0.3 2,500,362 - Dsui_2347 0.59 -0.3 2,500,399 - Dsui_2347 0.60 +0.7 2,500,612 - Dsui_2347 0.68 -0.3 2,500,644 - Dsui_2347 0.69 +0.7 2,500,649 + +0.7 2,500,708 + -0.3 2,500,732 + +0.7 2,500,735 - Dsui_2347 0.72 -1.6 2,500,742 + +0.7 2,500,750 - Dsui_2347 0.73 -0.3 2,500,841 - Dsui_2347 0.76 -0.3 2,500,851 - Dsui_2347 0.77 +0.7 2,500,863 - Dsui_2347 0.77 +0.7 2,500,916 - Dsui_2347 0.79 +0.7 2,500,928 + +0.7 2,500,961 + -1.6 2,500,969 - Dsui_2347 0.81 +0.7 2,500,969 - Dsui_2347 0.81 -1.3 2,501,027 - Dsui_2347 0.83 -0.3 2,501,054 - Dsui_2347 0.84 -1.3 2,501,076 + +1.7 2,501,089 - Dsui_2347 0.86 +0.1 2,501,522 - -0.3 2,501,655 + -0.3 2,501,663 - -1.9 2,501,663 - -1.9 2,501,725 - Dsui_2348 0.12 -1.3 2,501,731 - Dsui_2348 0.14 -1.7 2,501,769 - -0.9 2,501,770 - Dsui_2348 0.24 -1.9 2,501,780 - Dsui_2348 0.27 -2.6 2,501,809 - Dsui_2348 0.35 +0.7 2,501,895 + +0.7 2,502,038 - +2.1 2,502,038 - +0.7 2,502,140 + +0.7 2,502,216 - -0.3 2,502,317 - -1.9 2,502,319 - -0.9 2,502,334 + +0.7 2,502,397 - +0.7 2,502,436 - -1.6 2,502,436 - +0.7 2,502,461 - Dsui_2349 0.12 +1.3
Or see this region's nucleotide sequence