Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2267 and Dsui_2268 are separated by 466 nucleotides Dsui_2268 and Dsui_2269 are separated by 45 nucleotides Dsui_2269 and Dsui_2270 are separated by 280 nucleotides Dsui_2270 and Dsui_2271 are separated by 54 nucleotides
Dsui_2267: Dsui_2267 - hypothetical protein, at 2,418,914 to 2,419,648
_2267
Dsui_2268: Dsui_2268 - putative lactoylglutathione lyase, at 2,420,115 to 2,420,552
_2268
Dsui_2269: Dsui_2269 - SOS regulatory protein LexA, at 2,420,598 to 2,421,209
_2269
Dsui_2270: Dsui_2270 - hypothetical protein, at 2,421,490 to 2,421,693
_2270
Dsui_2271: Dsui_2271 - hypothetical protein, at 2,421,748 to 2,422,731
_2271
Position (kb)
2420
2421
2422 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2419.620 kb on - strand at 2419.659 kb on + strand at 2419.850 kb on - strand at 2419.855 kb on + strand at 2419.863 kb on - strand at 2419.972 kb on - strand at 2419.979 kb on - strand at 2420.007 kb on - strand at 2420.177 kb on + strand at 2420.234 kb on - strand, within Dsui_2268 at 2420.269 kb on + strand at 2420.269 kb on + strand at 2420.269 kb on + strand at 2420.277 kb on - strand, within Dsui_2268 at 2420.277 kb on - strand, within Dsui_2268 at 2420.342 kb on + strand at 2420.411 kb on + strand at 2420.424 kb on - strand, within Dsui_2268 at 2420.469 kb on + strand at 2420.530 kb on - strand at 2420.959 kb on - strand, within Dsui_2269 at 2421.207 kb on - strand at 2421.440 kb on + strand at 2421.487 kb on + strand at 2421.605 kb on - strand, within Dsui_2270 at 2421.618 kb on - strand at 2421.902 kb on - strand, within Dsui_2271 at 2422.011 kb on + strand at 2422.050 kb on + strand, within Dsui_2271 at 2422.066 kb on - strand, within Dsui_2271 at 2422.133 kb on - strand, within Dsui_2271
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 2,419,620 - -0.2 2,419,659 + -0.2 2,419,850 - +0.8 2,419,855 + +0.8 2,419,863 - -0.2 2,419,972 - -1.2 2,419,979 - +0.8 2,420,007 - -0.8 2,420,177 + +0.8 2,420,234 - Dsui_2268 0.27 +2.0 2,420,269 + +0.8 2,420,269 + +0.8 2,420,269 + -0.2 2,420,277 - Dsui_2268 0.37 +0.4 2,420,277 - Dsui_2268 0.37 -0.8 2,420,342 + +0.8 2,420,411 + +0.8 2,420,424 - Dsui_2268 0.71 -1.8 2,420,469 + -0.2 2,420,530 - +0.5 2,420,959 - Dsui_2269 0.59 -0.7 2,421,207 - +0.3 2,421,440 + +0.8 2,421,487 + -0.2 2,421,605 - Dsui_2270 0.56 -0.8 2,421,618 - +0.7 2,421,902 - Dsui_2271 0.16 +0.7 2,422,011 + +0.7 2,422,050 + Dsui_2271 0.31 -0.3 2,422,066 - Dsui_2271 0.32 +0.6 2,422,133 - Dsui_2271 0.39 -0.7
Or see this region's nucleotide sequence