Strain Fitness in Dechlorosoma suillum PS around Dsui_2267

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2266 and Dsui_2267 are separated by 25 nucleotidesDsui_2267 and Dsui_2268 are separated by 466 nucleotidesDsui_2268 and Dsui_2269 are separated by 45 nucleotides Dsui_2266: Dsui_2266 - nucleotidyltransferase/DNA polymerase involved in DNA repair, at 2,417,395 to 2,418,888 _2266 Dsui_2267: Dsui_2267 - hypothetical protein, at 2,418,914 to 2,419,648 _2267 Dsui_2268: Dsui_2268 - putative lactoylglutathione lyase, at 2,420,115 to 2,420,552 _2268 Dsui_2269: Dsui_2269 - SOS regulatory protein LexA, at 2,420,598 to 2,421,209 _2269 Position (kb) 2418 2419 2420Strain fitness (log2 ratio) -2 -1 0 1 2at 2417.939 kb on - strand, within Dsui_2266at 2418.218 kb on - strandat 2418.222 kb on + strandat 2418.224 kb on - strand, within Dsui_2266at 2418.342 kb on - strandat 2418.348 kb on - strandat 2418.413 kb on - strandat 2418.619 kb on - strandat 2418.719 kb on - strand, within Dsui_2266at 2419.517 kb on + strandat 2419.522 kb on + strandat 2419.620 kb on - strandat 2419.659 kb on + strandat 2419.850 kb on - strandat 2419.855 kb on + strandat 2419.863 kb on - strandat 2419.972 kb on - strandat 2419.979 kb on - strandat 2420.007 kb on - strandat 2420.177 kb on + strandat 2420.234 kb on - strand, within Dsui_2268at 2420.269 kb on + strandat 2420.269 kb on + strandat 2420.269 kb on + strandat 2420.277 kb on - strand, within Dsui_2268at 2420.277 kb on - strand, within Dsui_2268at 2420.342 kb on + strandat 2420.411 kb on + strandat 2420.424 kb on - strand, within Dsui_2268at 2420.469 kb on + strandat 2420.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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2,417,939 - Dsui_2266 0.36 -1.2
2,418,218 - -0.2
2,418,222 + +0.8
2,418,224 - Dsui_2266 0.55 -0.2
2,418,342 - -1.6
2,418,348 - +0.8
2,418,413 - +0.8
2,418,619 - +0.8
2,418,719 - Dsui_2266 0.89 -1.8
2,419,517 + -0.2
2,419,522 + +0.8
2,419,620 - -0.2
2,419,659 + -0.2
2,419,850 - +0.8
2,419,855 + +0.8
2,419,863 - -0.2
2,419,972 - -1.2
2,419,979 - +0.8
2,420,007 - -0.8
2,420,177 + +0.8
2,420,234 - Dsui_2268 0.27 +2.0
2,420,269 + +0.8
2,420,269 + +0.8
2,420,269 + -0.2
2,420,277 - Dsui_2268 0.37 +0.4
2,420,277 - Dsui_2268 0.37 -0.8
2,420,342 + +0.8
2,420,411 + +0.8
2,420,424 - Dsui_2268 0.71 -1.8
2,420,469 + -0.2
2,420,530 - +0.5

Or see this region's nucleotide sequence