Strain Fitness in Dechlorosoma suillum PS around Dsui_2266

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2265 and Dsui_2266 are separated by 248 nucleotidesDsui_2266 and Dsui_2267 are separated by 25 nucleotides Dsui_2265: Dsui_2265 - DNA-directed DNA polymerase III PolC, at 2,413,814 to 2,417,146 _2265 Dsui_2266: Dsui_2266 - nucleotidyltransferase/DNA polymerase involved in DNA repair, at 2,417,395 to 2,418,888 _2266 Dsui_2267: Dsui_2267 - hypothetical protein, at 2,418,914 to 2,419,648 _2267 Position (kb) 2417 2418 2419Strain fitness (log2 ratio) -2 -1 0 1at 2416.404 kb on + strandat 2416.636 kb on - strandat 2416.717 kb on - strand, within Dsui_2265at 2416.835 kb on + strandat 2416.896 kb on - strandat 2417.564 kb on - strandat 2417.629 kb on - strand, within Dsui_2266at 2417.782 kb on + strandat 2417.782 kb on + strandat 2417.782 kb on + strandat 2417.791 kb on - strandat 2417.807 kb on - strandat 2417.821 kb on + strandat 2417.939 kb on - strand, within Dsui_2266at 2418.218 kb on - strandat 2418.222 kb on + strandat 2418.224 kb on - strand, within Dsui_2266at 2418.342 kb on - strandat 2418.348 kb on - strandat 2418.413 kb on - strandat 2418.619 kb on - strandat 2418.719 kb on - strand, within Dsui_2266at 2419.517 kb on + strandat 2419.522 kb on + strandat 2419.620 kb on - strandat 2419.659 kb on + strandat 2419.850 kb on - strandat 2419.855 kb on + strandat 2419.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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2,416,404 + -1.2
2,416,636 - +0.8
2,416,717 - Dsui_2265 0.87 -0.8
2,416,835 + -0.2
2,416,896 - +0.8
2,417,564 - -0.2
2,417,629 - Dsui_2266 0.16 -0.2
2,417,782 + -0.2
2,417,782 + +0.8
2,417,782 + +0.8
2,417,791 - -0.2
2,417,807 - -0.2
2,417,821 + +0.8
2,417,939 - Dsui_2266 0.36 -1.2
2,418,218 - -0.2
2,418,222 + +0.8
2,418,224 - Dsui_2266 0.55 -0.2
2,418,342 - -1.6
2,418,348 - +0.8
2,418,413 - +0.8
2,418,619 - +0.8
2,418,719 - Dsui_2266 0.89 -1.8
2,419,517 + -0.2
2,419,522 + +0.8
2,419,620 - -0.2
2,419,659 + -0.2
2,419,850 - +0.8
2,419,855 + +0.8
2,419,863 - -0.2

Or see this region's nucleotide sequence