Strain Fitness in Dechlorosoma suillum PS around Dsui_2185

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2183 and Dsui_2184 are separated by 114 nucleotidesDsui_2184 and Dsui_2185 are separated by 71 nucleotidesDsui_2185 and Dsui_2186 are separated by 185 nucleotidesDsui_2186 and Dsui_2187 are separated by 70 nucleotides Dsui_2183: Dsui_2183 - aldose 1-epimerase-like enzyme, at 2,318,747 to 2,319,619 _2183 Dsui_2184: Dsui_2184 - hypothetical protein, at 2,319,734 to 2,320,282 _2184 Dsui_2185: Dsui_2185 - DNA-3-methyladenine glycosylase I, at 2,320,354 to 2,320,926 _2185 Dsui_2186: Dsui_2186 - Protein of unknown function (DUF3567), at 2,321,112 to 2,321,345 _2186 Dsui_2187: Dsui_2187 - acyl-CoA synthetase/AMP-acid ligase, at 2,321,416 to 2,323,113 _2187 Position (kb) 2320 2321Strain fitness (log2 ratio) -2 -1 0 1at 2319.369 kb on - strand, within Dsui_2183at 2319.402 kb on - strand, within Dsui_2183at 2319.564 kb on - strandat 2319.874 kb on + strandat 2319.977 kb on + strand, within Dsui_2184at 2320.260 kb on - strandat 2320.299 kb on - strandat 2320.402 kb on + strandat 2320.425 kb on + strand, within Dsui_2185at 2320.477 kb on - strandat 2320.619 kb on - strand, within Dsui_2185at 2320.650 kb on + strandat 2320.697 kb on + strandat 2320.784 kb on + strand, within Dsui_2185at 2320.901 kb on - strandat 2320.978 kb on + strandat 2321.011 kb on + strandat 2321.018 kb on - strandat 2321.045 kb on - strandat 2321.155 kb on + strand, within Dsui_2186at 2321.317 kb on + strand, within Dsui_2186at 2321.353 kb on - strandat 2321.435 kb on - strandat 2321.534 kb on + strandat 2321.542 kb on - strandat 2321.542 kb on - strandat 2321.660 kb on - strandat 2321.833 kb on - strandat 2321.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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2,319,369 - Dsui_2183 0.71 -1.5
2,319,402 - Dsui_2183 0.75 +0.9
2,319,564 - -1.1
2,319,874 + +0.9
2,319,977 + Dsui_2184 0.44 -0.1
2,320,260 - -1.9
2,320,299 - -1.1
2,320,402 + -0.1
2,320,425 + Dsui_2185 0.12 -0.7
2,320,477 - +0.9
2,320,619 - Dsui_2185 0.46 -0.1
2,320,650 + +0.9
2,320,697 + +0.9
2,320,784 + Dsui_2185 0.75 -0.7
2,320,901 - +0.9
2,320,978 + +0.9
2,321,011 + +0.9
2,321,018 - +0.9
2,321,045 - -0.1
2,321,155 + Dsui_2186 0.18 +0.9
2,321,317 + Dsui_2186 0.88 -0.1
2,321,353 - +0.9
2,321,435 - -1.1
2,321,534 + +0.9
2,321,542 - -1.1
2,321,542 - -0.1
2,321,660 - -0.7
2,321,833 - +0.9
2,321,852 + +0.9

Or see this region's nucleotide sequence