Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2176 and Dsui_2177 are separated by 89 nucleotides Dsui_2177 and Dsui_2178 are separated by 67 nucleotides Dsui_2178 and Dsui_2179 are separated by 34 nucleotides Dsui_2179 and Dsui_2180 are separated by 78 nucleotides
Dsui_2176: Dsui_2176 - putative esterase of the alpha-beta hydrolase superfamily, at 2,312,502 to 2,313,542
_2176
Dsui_2177: Dsui_2177 - methyltransferase family protein, at 2,313,632 to 2,314,270
_2177
Dsui_2178: Dsui_2178 - hypothetical protein, at 2,314,338 to 2,315,144
_2178
Dsui_2179: Dsui_2179 - conserved protein of DIM6/NTAB family, at 2,315,179 to 2,315,745
_2179
Dsui_2180: Dsui_2180 - hypothetical protein, at 2,315,824 to 2,316,072
_2180
Position (kb)
2314
2315
2316 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2313.351 kb on + strand, within Dsui_2176 at 2313.444 kb on + strand at 2313.493 kb on + strand at 2313.578 kb on + strand at 2313.608 kb on + strand at 2313.663 kb on - strand at 2313.682 kb on - strand at 2313.685 kb on + strand at 2313.713 kb on - strand at 2313.786 kb on + strand, within Dsui_2177 at 2313.904 kb on + strand, within Dsui_2177 at 2313.951 kb on - strand at 2314.012 kb on + strand, within Dsui_2177 at 2314.120 kb on - strand, within Dsui_2177 at 2314.167 kb on + strand at 2314.243 kb on - strand at 2314.371 kb on + strand at 2314.429 kb on + strand, within Dsui_2178 at 2314.523 kb on - strand, within Dsui_2178 at 2314.561 kb on + strand, within Dsui_2178 at 2314.583 kb on + strand, within Dsui_2178 at 2314.826 kb on + strand, within Dsui_2178 at 2314.852 kb on + strand at 2314.857 kb on - strand at 2315.096 kb on + strand at 2315.214 kb on - strand at 2315.254 kb on + strand, within Dsui_2179 at 2315.313 kb on + strand, within Dsui_2179 at 2315.377 kb on - strand at 2315.404 kb on + strand, within Dsui_2179 at 2315.411 kb on - strand at 2315.412 kb on - strand, within Dsui_2179 at 2315.498 kb on + strand, within Dsui_2179 at 2315.570 kb on + strand at 2315.706 kb on + strand at 2315.734 kb on - strand at 2315.931 kb on + strand at 2316.023 kb on - strand, within Dsui_2180 at 2316.036 kb on + strand at 2316.043 kb on + strand, within Dsui_2180 at 2316.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 2,313,351 + Dsui_2176 0.82 +0.9 2,313,444 + -0.7 2,313,493 + +0.9 2,313,578 + -0.7 2,313,608 + +4.0 2,313,663 - -0.1 2,313,682 - -0.1 2,313,685 + +1.7 2,313,713 - +0.9 2,313,786 + Dsui_2177 0.24 +1.6 2,313,904 + Dsui_2177 0.43 +0.5 2,313,951 - +0.9 2,314,012 + Dsui_2177 0.59 +0.7 2,314,120 - Dsui_2177 0.76 -0.7 2,314,167 + +3.7 2,314,243 - +0.9 2,314,371 + +0.1 2,314,429 + Dsui_2178 0.11 -1.1 2,314,523 - Dsui_2178 0.23 -1.7 2,314,561 + Dsui_2178 0.28 -1.1 2,314,583 + Dsui_2178 0.30 -0.1 2,314,826 + Dsui_2178 0.60 -2.3 2,314,852 + -0.1 2,314,857 - -0.1 2,315,096 + -0.7 2,315,214 - -2.1 2,315,254 + Dsui_2179 0.13 -0.4 2,315,313 + Dsui_2179 0.24 -0.4 2,315,377 - +0.9 2,315,404 + Dsui_2179 0.40 +0.7 2,315,411 - +0.9 2,315,412 - Dsui_2179 0.41 -1.9 2,315,498 + Dsui_2179 0.56 -0.1 2,315,570 + +0.9 2,315,706 + -1.1 2,315,734 - +1.0 2,315,931 + +0.9 2,316,023 - Dsui_2180 0.80 +0.1 2,316,036 + -0.1 2,316,043 + Dsui_2180 0.88 +2.5 2,316,075 - +0.8
Or see this region's nucleotide sequence