Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2172 and Dsui_2173 are separated by 172 nucleotides Dsui_2173 and Dsui_2174 are separated by 203 nucleotides Dsui_2174 and Dsui_2175 are separated by 113 nucleotides
Dsui_2172: Dsui_2172 - transcriptional regulator, at 2,308,468 to 2,308,944
_2172
Dsui_2173: Dsui_2173 - peroxiredoxin, Ohr subfamily, at 2,309,117 to 2,309,542
_2173
Dsui_2174: Dsui_2174 - putative signal transduction protein, at 2,309,746 to 2,310,600
_2174
Dsui_2175: Dsui_2175 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,310,714 to 2,312,354
_2175
Position (kb)
2309
2310
2311 Strain fitness (log2 ratio)
-2
-1
0
1 at 2308.849 kb on + strand, within Dsui_2172 at 2308.957 kb on + strand at 2308.970 kb on + strand at 2309.060 kb on + strand at 2309.060 kb on + strand at 2309.078 kb on - strand at 2309.157 kb on - strand at 2309.199 kb on + strand, within Dsui_2173 at 2309.329 kb on + strand, within Dsui_2173 at 2309.356 kb on - strand at 2309.361 kb on - strand at 2309.536 kb on + strand at 2309.589 kb on + strand at 2309.627 kb on - strand at 2309.770 kb on - strand at 2309.781 kb on - strand at 2309.866 kb on + strand at 2309.866 kb on + strand at 2309.874 kb on - strand, within Dsui_2174 at 2309.874 kb on - strand, within Dsui_2174 at 2309.879 kb on - strand, within Dsui_2174 at 2309.896 kb on + strand, within Dsui_2174 at 2309.904 kb on - strand, within Dsui_2174 at 2309.908 kb on + strand, within Dsui_2174 at 2309.945 kb on - strand, within Dsui_2174 at 2309.946 kb on + strand at 2309.989 kb on + strand at 2310.257 kb on + strand at 2310.265 kb on - strand, within Dsui_2174 at 2310.265 kb on - strand, within Dsui_2174 at 2310.305 kb on - strand, within Dsui_2174 at 2310.415 kb on - strand, within Dsui_2174 at 2310.451 kb on - strand, within Dsui_2174 at 2310.501 kb on - strand, within Dsui_2174 at 2310.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 2,308,849 + Dsui_2172 0.80 -1.1 2,308,957 + +0.5 2,308,970 + -1.0 2,309,060 + -0.1 2,309,060 + +0.9 2,309,078 - +0.9 2,309,157 - -1.7 2,309,199 + Dsui_2173 0.19 +0.9 2,309,329 + Dsui_2173 0.50 -0.1 2,309,356 - +0.9 2,309,361 - +0.9 2,309,536 + -0.7 2,309,589 + -0.1 2,309,627 - +0.9 2,309,770 - -0.3 2,309,781 - +0.5 2,309,866 + +0.9 2,309,866 + +0.9 2,309,874 - Dsui_2174 0.15 +1.0 2,309,874 - Dsui_2174 0.15 +0.7 2,309,879 - Dsui_2174 0.16 +0.1 2,309,896 + Dsui_2174 0.18 -1.0 2,309,904 - Dsui_2174 0.18 +0.3 2,309,908 + Dsui_2174 0.19 -1.1 2,309,945 - Dsui_2174 0.23 -2.1 2,309,946 + +0.9 2,309,989 + +0.9 2,310,257 + -0.1 2,310,265 - Dsui_2174 0.61 -1.1 2,310,265 - Dsui_2174 0.61 +1.2 2,310,305 - Dsui_2174 0.65 -1.1 2,310,415 - Dsui_2174 0.78 +1.3 2,310,451 - Dsui_2174 0.82 -0.5 2,310,501 - Dsui_2174 0.88 +0.8 2,310,617 - +1.2
Or see this region's nucleotide sequence