Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2051 and Dsui_2052 overlap by 4 nucleotides Dsui_2052 and Dsui_2053 are separated by 137 nucleotides Dsui_2053 and Dsui_2054 are separated by 16 nucleotides Dsui_2054 and Dsui_2055 are separated by 194 nucleotides
Dsui_2051: Dsui_2051 - hypothetical protein, at 2,172,648 to 2,172,818
_2051
Dsui_2052: Dsui_2052 - hypothetical protein, at 2,172,815 to 2,173,012
_2052
Dsui_2053: Dsui_2053 - HNH endonuclease, at 2,173,150 to 2,173,530
_2053
Dsui_2054: Dsui_2054 - hypothetical protein, at 2,173,547 to 2,173,915
_2054
Dsui_2055: Dsui_2055 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,174,110 to 2,174,913
_2055
Position (kb)
2173
2174 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2172.667 kb on + strand, within Dsui_2051 at 2172.677 kb on + strand at 2172.729 kb on - strand, within Dsui_2051 at 2172.831 kb on + strand at 2172.908 kb on + strand, within Dsui_2052 at 2172.931 kb on - strand, within Dsui_2052 at 2172.964 kb on - strand, within Dsui_2052 at 2172.972 kb on + strand, within Dsui_2052 at 2173.083 kb on - strand at 2173.147 kb on + strand at 2173.153 kb on + strand at 2173.160 kb on + strand at 2173.168 kb on - strand at 2173.181 kb on + strand at 2173.243 kb on + strand, within Dsui_2053 at 2173.359 kb on - strand, within Dsui_2053 at 2173.448 kb on + strand, within Dsui_2053 at 2173.503 kb on - strand at 2173.503 kb on - strand at 2173.525 kb on + strand at 2173.592 kb on + strand at 2173.624 kb on + strand, within Dsui_2054 at 2173.714 kb on - strand, within Dsui_2054 at 2173.778 kb on + strand, within Dsui_2054 at 2173.809 kb on - strand, within Dsui_2054 at 2173.941 kb on - strand at 2174.022 kb on - strand at 2174.058 kb on + strand at 2174.089 kb on - strand at 2174.099 kb on - strand at 2174.182 kb on + strand at 2174.189 kb on + strand at 2174.262 kb on - strand at 2174.271 kb on - strand at 2174.401 kb on - strand at 2174.654 kb on - strand, within Dsui_2055 at 2174.775 kb on - strand at 2174.823 kb on - strand, within Dsui_2055
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 2,172,667 + Dsui_2051 0.11 -0.1 2,172,677 + +0.9 2,172,729 - Dsui_2051 0.47 +0.9 2,172,831 + -0.1 2,172,908 + Dsui_2052 0.47 -0.1 2,172,931 - Dsui_2052 0.59 -3.8 2,172,964 - Dsui_2052 0.75 +0.9 2,172,972 + Dsui_2052 0.79 +1.5 2,173,083 - -1.1 2,173,147 + -1.3 2,173,153 + +0.9 2,173,160 + +0.3 2,173,168 - -1.1 2,173,181 + +0.9 2,173,243 + Dsui_2053 0.24 -2.4 2,173,359 - Dsui_2053 0.55 +1.9 2,173,448 + Dsui_2053 0.78 -0.7 2,173,503 - -0.9 2,173,503 - +0.9 2,173,525 + +0.9 2,173,592 + +0.9 2,173,624 + Dsui_2054 0.21 -0.1 2,173,714 - Dsui_2054 0.45 -1.1 2,173,778 + Dsui_2054 0.63 +0.9 2,173,809 - Dsui_2054 0.71 +3.2 2,173,941 - -0.7 2,174,022 - +0.9 2,174,058 + -0.1 2,174,089 - -0.1 2,174,099 - +0.9 2,174,182 + -0.7 2,174,189 + +0.9 2,174,262 - +0.9 2,174,271 - +0.9 2,174,401 - +0.9 2,174,654 - Dsui_2055 0.68 -0.1 2,174,775 - +0.9 2,174,823 - Dsui_2055 0.89 -0.1
Or see this region's nucleotide sequence