Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1984 and Dsui_1985 overlap by 4 nucleotides Dsui_1985 and Dsui_1986 are separated by 28 nucleotides Dsui_1986 and Dsui_1987 are separated by 24 nucleotides Dsui_1987 and Dsui_1988 are separated by 105 nucleotides
Dsui_1984: Dsui_1984 - thioredoxin-dependent adenylylsulfate APS reductase, at 2,093,708 to 2,094,430
_1984
Dsui_1985: Dsui_1985 - hypothetical protein, at 2,094,427 to 2,094,945
_1985
Dsui_1986: Dsui_1986 - sulfite reductase, beta subunit (hemoprotein), at 2,094,974 to 2,096,650
_1986
Dsui_1987: Dsui_1987 - putative permease, at 2,096,675 to 2,097,448
_1987
Dsui_1988: Dsui_1988 - transcriptional regulator, at 2,097,554 to 2,098,528
_1988
Position (kb)
2094
2095
2096
2097 Strain fitness (log2 ratio)
-1
0
1 at 2094.992 kb on - strand at 2095.013 kb on - strand at 2096.707 kb on - strand at 2096.785 kb on + strand at 2096.785 kb on + strand at 2096.871 kb on - strand, within Dsui_1987 at 2096.925 kb on - strand, within Dsui_1987 at 2096.925 kb on - strand, within Dsui_1987 at 2096.997 kb on - strand, within Dsui_1987 at 2096.997 kb on - strand, within Dsui_1987 at 2097.003 kb on - strand, within Dsui_1987 at 2097.063 kb on + strand at 2097.063 kb on + strand at 2097.069 kb on - strand, within Dsui_1987 at 2097.071 kb on - strand, within Dsui_1987 at 2097.191 kb on - strand, within Dsui_1987 at 2097.192 kb on - strand, within Dsui_1987 at 2097.276 kb on - strand, within Dsui_1987 at 2097.308 kb on - strand, within Dsui_1987 at 2097.325 kb on - strand, within Dsui_1987 at 2097.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 2,094,992 - +0.4 2,095,013 - +1.4 2,096,707 - +0.1 2,096,785 + +1.1 2,096,785 + +1.1 2,096,871 - Dsui_1987 0.25 +0.7 2,096,925 - Dsui_1987 0.32 +0.5 2,096,925 - Dsui_1987 0.32 +1.1 2,096,997 - Dsui_1987 0.42 +0.5 2,096,997 - Dsui_1987 0.42 +0.4 2,097,003 - Dsui_1987 0.42 +0.9 2,097,063 + +1.1 2,097,063 + +1.1 2,097,069 - Dsui_1987 0.51 +1.5 2,097,071 - Dsui_1987 0.51 +1.2 2,097,191 - Dsui_1987 0.67 +1.0 2,097,192 - Dsui_1987 0.67 +1.3 2,097,276 - Dsui_1987 0.78 +0.5 2,097,308 - Dsui_1987 0.82 +0.8 2,097,325 - Dsui_1987 0.84 +1.3 2,097,441 - +0.6
Or see this region's nucleotide sequence