Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1888 and Dsui_1889 are separated by 1 nucleotides Dsui_1889 and Dsui_1890 overlap by 4 nucleotides Dsui_1890 and Dsui_1891 are separated by 144 nucleotides
Dsui_1888: Dsui_1888 - putative domain HDIG-containing protein, at 1,987,880 to 1,988,743
_1888
Dsui_1889: Dsui_1889 - hypothetical protein, at 1,988,745 to 1,989,068
_1889
Dsui_1890: Dsui_1890 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,989,065 to 1,991,605
_1890
Dsui_1891: Dsui_1891 - enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase, at 1,991,750 to 1,992,919
_1891
Position (kb) 1989
1990
1991
1992 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1988.129 kb on - strand, within Dsui_1888 at 1988.160 kb on + strand at 1988.177 kb on + strand at 1988.184 kb on - strand, within Dsui_1888 at 1988.438 kb on + strand, within Dsui_1888 at 1988.440 kb on - strand, within Dsui_1888 at 1988.776 kb on + strand at 1988.794 kb on - strand, within Dsui_1889 at 1989.230 kb on + strand at 1989.245 kb on - strand at 1989.365 kb on + strand, within Dsui_1890 at 1989.395 kb on - strand, within Dsui_1890 at 1989.532 kb on + strand, within Dsui_1890 at 1989.661 kb on + strand, within Dsui_1890 at 1989.864 kb on - strand, within Dsui_1890 at 1989.995 kb on - strand, within Dsui_1890 at 1989.995 kb on - strand, within Dsui_1890 at 1990.061 kb on + strand at 1990.109 kb on + strand, within Dsui_1890 at 1990.140 kb on - strand at 1990.171 kb on + strand, within Dsui_1890 at 1990.185 kb on + strand at 1990.450 kb on - strand, within Dsui_1890 at 1990.538 kb on - strand, within Dsui_1890 at 1990.593 kb on + strand at 1990.852 kb on + strand, within Dsui_1890 at 1990.894 kb on + strand, within Dsui_1890 at 1990.904 kb on + strand, within Dsui_1890 at 1990.922 kb on - strand, within Dsui_1890 at 1990.972 kb on + strand, within Dsui_1890 at 1990.995 kb on + strand at 1991.108 kb on + strand at 1991.116 kb on - strand, within Dsui_1890 at 1991.394 kb on - strand at 1991.409 kb on - strand at 1991.575 kb on - strand at 1991.670 kb on - strand at 1991.699 kb on - strand at 1991.901 kb on - strand at 1991.977 kb on + strand at 1992.045 kb on + strand, within Dsui_1891 at 1992.097 kb on + strand, within Dsui_1891 at 1992.102 kb on + strand, within Dsui_1891 at 1992.193 kb on - strand, within Dsui_1891 at 1992.193 kb on - strand at 1992.246 kb on - strand at 1992.345 kb on - strand at 1992.408 kb on + strand at 1992.546 kb on + strand, within Dsui_1891 at 1992.567 kb on - strand, within Dsui_1891 at 1992.570 kb on + strand, within Dsui_1891 at 1992.578 kb on - strand, within Dsui_1891
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,988,129 - Dsui_1888 0.29 -0.1 1,988,160 + -0.1 1,988,177 + +0.9 1,988,184 - Dsui_1888 0.35 -1.5 1,988,438 + Dsui_1888 0.65 -1.9 1,988,440 - Dsui_1888 0.65 -0.1 1,988,776 + +0.9 1,988,794 - Dsui_1889 0.15 +0.9 1,989,230 + -0.1 1,989,245 - +0.9 1,989,365 + Dsui_1890 0.12 -0.7 1,989,395 - Dsui_1890 0.13 +2.2 1,989,532 + Dsui_1890 0.18 +0.9 1,989,661 + Dsui_1890 0.23 -0.1 1,989,864 - Dsui_1890 0.31 +0.3 1,989,995 - Dsui_1890 0.37 +0.9 1,989,995 - Dsui_1890 0.37 +0.9 1,990,061 + -0.7 1,990,109 + Dsui_1890 0.41 -1.9 1,990,140 - +0.9 1,990,171 + Dsui_1890 0.44 -1.5 1,990,185 + -1.7 1,990,450 - Dsui_1890 0.55 -0.1 1,990,538 - Dsui_1890 0.58 +0.9 1,990,593 + -0.7 1,990,852 + Dsui_1890 0.70 -0.1 1,990,894 + Dsui_1890 0.72 -0.7 1,990,904 + Dsui_1890 0.72 -0.7 1,990,922 - Dsui_1890 0.73 +0.9 1,990,972 + Dsui_1890 0.75 +0.9 1,990,995 + +0.9 1,991,108 + -0.1 1,991,116 - Dsui_1890 0.81 -0.7 1,991,394 - +0.9 1,991,409 - -0.1 1,991,575 - +0.9 1,991,670 - -1.1 1,991,699 - -1.1 1,991,901 - +0.9 1,991,977 + +0.9 1,992,045 + Dsui_1891 0.25 +0.9 1,992,097 + Dsui_1891 0.30 +0.9 1,992,102 + Dsui_1891 0.30 +0.9 1,992,193 - Dsui_1891 0.38 -0.1 1,992,193 - +0.9 1,992,246 - -0.7 1,992,345 - +0.9 1,992,408 + -0.1 1,992,546 + Dsui_1891 0.68 +0.9 1,992,567 - Dsui_1891 0.70 -0.1 1,992,570 + Dsui_1891 0.70 +0.9 1,992,578 - Dsui_1891 0.71 +0.9
Or see this region's nucleotide sequence