Strain Fitness in Dechlorosoma suillum PS around Dsui_1852

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1851 and Dsui_1852 are separated by 3 nucleotidesDsui_1852 and Dsui_1853 are separated by 215 nucleotidesDsui_1853 and Dsui_1854 are separated by 1 nucleotides Dsui_1851: Dsui_1851 - signal transduction histidine kinase, at 1,945,413 to 1,946,837 _1851 Dsui_1852: Dsui_1852 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,946,841 to 1,947,530 _1852 Dsui_1853: Dsui_1853 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 1,947,746 to 1,948,312 _1853 Dsui_1854: Dsui_1854 - hypothetical protein, at 1,948,314 to 1,949,579 _1854 Position (kb) 1946 1947 1948Strain fitness (log2 ratio) -3 -2 -1 0 1at 1945.922 kb on - strand, within Dsui_1851at 1945.955 kb on + strandat 1946.037 kb on + strandat 1946.077 kb on + strandat 1946.095 kb on - strand, within Dsui_1851at 1946.267 kb on - strand, within Dsui_1851at 1946.316 kb on + strandat 1946.317 kb on + strand, within Dsui_1851at 1946.340 kb on - strand, within Dsui_1851at 1946.527 kb on + strand, within Dsui_1851at 1946.575 kb on + strand, within Dsui_1851at 1946.839 kb on + strandat 1946.917 kb on - strandat 1946.996 kb on + strandat 1947.005 kb on + strand, within Dsui_1852at 1947.030 kb on + strand, within Dsui_1852at 1947.188 kb on - strand, within Dsui_1852at 1947.262 kb on - strand, within Dsui_1852at 1947.561 kb on + strandat 1947.617 kb on + strandat 1947.617 kb on + strandat 1947.617 kb on + strandat 1947.625 kb on - strandat 1947.625 kb on - strandat 1947.625 kb on - strandat 1947.625 kb on - strandat 1947.644 kb on - strandat 1947.697 kb on + strandat 1947.783 kb on + strandat 1947.928 kb on + strand, within Dsui_1853at 1947.929 kb on + strand, within Dsui_1853at 1947.960 kb on + strandat 1948.009 kb on + strandat 1948.044 kb on - strandat 1948.111 kb on + strandat 1948.120 kb on - strand, within Dsui_1853at 1948.130 kb on - strandat 1948.375 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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1,945,922 - Dsui_1851 0.36 -2.0
1,945,955 + +0.8
1,946,037 + -0.8
1,946,077 + -1.2
1,946,095 - Dsui_1851 0.48 -0.2
1,946,267 - Dsui_1851 0.60 -0.2
1,946,316 + +0.8
1,946,317 + Dsui_1851 0.63 -0.8
1,946,340 - Dsui_1851 0.65 +0.8
1,946,527 + Dsui_1851 0.78 -0.8
1,946,575 + Dsui_1851 0.82 -1.2
1,946,839 + -0.2
1,946,917 - +0.8
1,946,996 + -0.2
1,947,005 + Dsui_1852 0.24 -3.3
1,947,030 + Dsui_1852 0.27 -2.0
1,947,188 - Dsui_1852 0.50 -0.2
1,947,262 - Dsui_1852 0.61 -0.8
1,947,561 + -0.2
1,947,617 + -0.2
1,947,617 + +0.8
1,947,617 + +0.8
1,947,625 - -0.2
1,947,625 - -0.2
1,947,625 - -0.8
1,947,625 - +0.8
1,947,644 - +0.8
1,947,697 + +0.8
1,947,783 + -1.8
1,947,928 + Dsui_1853 0.32 -1.8
1,947,929 + Dsui_1853 0.32 -0.2
1,947,960 + +0.8
1,948,009 + +0.8
1,948,044 - -0.8
1,948,111 + +0.8
1,948,120 - Dsui_1853 0.66 -0.8
1,948,130 - +0.8
1,948,375 + +0.8

Or see this region's nucleotide sequence