Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1835 and Dsui_1836 are separated by 185 nucleotides Dsui_1836 and Dsui_1837 are separated by 11 nucleotides Dsui_1837 and Dsui_1838 are separated by 1 nucleotides
Dsui_1835: Dsui_1835 - glycosyltransferase, at 1,933,541 to 1,934,737
_1835
Dsui_1836: Dsui_1836 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,934,923 to 1,936,125
_1836
Dsui_1837: Dsui_1837 - cation/cationic drug transporter, at 1,936,137 to 1,936,463
_1837
Dsui_1838: Dsui_1838 - spermidine synthase, at 1,936,465 to 1,937,229
_1838
Position (kb)
1934
1935
1936
1937 Strain fitness (log2 ratio)
-2
-1
0
1 at 1933.986 kb on - strand, within Dsui_1835 at 1933.997 kb on + strand, within Dsui_1835 at 1934.067 kb on + strand at 1934.231 kb on - strand at 1934.240 kb on + strand, within Dsui_1835 at 1934.340 kb on + strand, within Dsui_1835 at 1934.340 kb on + strand, within Dsui_1835 at 1934.386 kb on + strand, within Dsui_1835 at 1934.386 kb on + strand, within Dsui_1835 at 1934.394 kb on - strand, within Dsui_1835 at 1934.615 kb on + strand, within Dsui_1835 at 1934.623 kb on + strand at 1934.691 kb on + strand at 1934.699 kb on - strand at 1935.048 kb on + strand, within Dsui_1836 at 1935.048 kb on + strand, within Dsui_1836 at 1935.091 kb on - strand at 1935.263 kb on + strand, within Dsui_1836 at 1935.302 kb on + strand, within Dsui_1836 at 1935.352 kb on + strand, within Dsui_1836 at 1935.416 kb on + strand, within Dsui_1836 at 1935.421 kb on + strand, within Dsui_1836 at 1935.421 kb on + strand, within Dsui_1836 at 1935.466 kb on - strand, within Dsui_1836 at 1935.567 kb on - strand, within Dsui_1836 at 1935.569 kb on - strand, within Dsui_1836 at 1935.577 kb on + strand, within Dsui_1836 at 1935.839 kb on + strand, within Dsui_1836 at 1935.844 kb on + strand, within Dsui_1836 at 1936.198 kb on - strand, within Dsui_1837 at 1936.235 kb on - strand, within Dsui_1837 at 1936.277 kb on + strand at 1936.353 kb on + strand, within Dsui_1837 at 1936.361 kb on + strand, within Dsui_1837 at 1936.361 kb on + strand at 1936.383 kb on + strand, within Dsui_1837 at 1936.664 kb on - strand, within Dsui_1838 at 1936.712 kb on - strand, within Dsui_1838 at 1936.756 kb on - strand, within Dsui_1838 at 1936.758 kb on + strand, within Dsui_1838 at 1936.758 kb on + strand, within Dsui_1838 at 1936.848 kb on + strand, within Dsui_1838 at 1936.989 kb on - strand, within Dsui_1838 at 1937.110 kb on - strand, within Dsui_1838 at 1937.112 kb on + strand, within Dsui_1838
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,933,986 - Dsui_1835 0.37 -1.6 1,933,997 + Dsui_1835 0.38 -0.9 1,934,067 + -0.3 1,934,231 - +0.7 1,934,240 + Dsui_1835 0.58 +0.7 1,934,340 + Dsui_1835 0.67 -0.3 1,934,340 + Dsui_1835 0.67 +0.7 1,934,386 + Dsui_1835 0.71 -1.3 1,934,386 + Dsui_1835 0.71 +0.7 1,934,394 - Dsui_1835 0.71 -0.3 1,934,615 + Dsui_1835 0.90 +0.7 1,934,623 + -0.3 1,934,691 + +0.7 1,934,699 - +0.7 1,935,048 + Dsui_1836 0.10 -0.9 1,935,048 + Dsui_1836 0.10 +0.7 1,935,091 - -0.3 1,935,263 + Dsui_1836 0.28 -0.3 1,935,302 + Dsui_1836 0.32 -0.9 1,935,352 + Dsui_1836 0.36 -0.3 1,935,416 + Dsui_1836 0.41 -1.3 1,935,421 + Dsui_1836 0.41 -1.6 1,935,421 + Dsui_1836 0.41 -1.3 1,935,466 - Dsui_1836 0.45 +0.7 1,935,567 - Dsui_1836 0.54 +0.7 1,935,569 - Dsui_1836 0.54 -0.9 1,935,577 + Dsui_1836 0.54 -0.3 1,935,839 + Dsui_1836 0.76 +0.7 1,935,844 + Dsui_1836 0.77 +0.7 1,936,198 - Dsui_1837 0.19 +0.0 1,936,235 - Dsui_1837 0.30 +0.9 1,936,277 + +0.7 1,936,353 + Dsui_1837 0.66 +0.7 1,936,361 + Dsui_1837 0.69 -0.3 1,936,361 + +0.7 1,936,383 + Dsui_1837 0.75 -2.1 1,936,664 - Dsui_1838 0.26 -0.5 1,936,712 - Dsui_1838 0.32 -0.2 1,936,756 - Dsui_1838 0.38 +0.2 1,936,758 + Dsui_1838 0.38 -0.9 1,936,758 + Dsui_1838 0.38 -2.4 1,936,848 + Dsui_1838 0.50 -1.9 1,936,989 - Dsui_1838 0.68 -0.9 1,937,110 - Dsui_1838 0.84 -0.1 1,937,112 + Dsui_1838 0.85 -1.3
Or see this region's nucleotide sequence