Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1825 and Dsui_1826 are separated by 72 nucleotides Dsui_1826 and Dsui_1827 are separated by 211 nucleotides Dsui_1827 and Dsui_1828 are separated by 24 nucleotides Dsui_1828 and Dsui_1829 are separated by 122 nucleotides
Dsui_1825: Dsui_1825 - NAD(P)H-dependent nitrite reductase, large subunit, at 1,924,142 to 1,926,580
_1825
Dsui_1826: Dsui_1826 - NAD(P)H-dependent nitrite reductase, small subunit, at 1,926,653 to 1,926,961
_1826
Dsui_1827: Dsui_1827 - hypothetical protein, at 1,927,173 to 1,927,541
_1827
Dsui_1828: Dsui_1828 - response regulator with putative antiterminator output domain, at 1,927,566 to 1,928,141
_1828
Dsui_1829: Dsui_1829 - hemerythrin HHE cation binding domain-containing protein, at 1,928,264 to 1,928,659
_1829
Position (kb)
1927
1928 Strain fitness (log2 ratio)
-2
-1
0
1 at 1926.195 kb on - strand, within Dsui_1825 at 1926.310 kb on - strand at 1926.310 kb on - strand at 1926.367 kb on + strand at 1926.406 kb on + strand at 1926.438 kb on - strand at 1926.444 kb on + strand at 1926.477 kb on - strand at 1926.611 kb on + strand at 1926.721 kb on - strand at 1926.737 kb on + strand at 1926.845 kb on + strand at 1926.899 kb on - strand, within Dsui_1826 at 1926.909 kb on - strand, within Dsui_1826 at 1926.950 kb on + strand at 1926.957 kb on + strand at 1927.069 kb on + strand at 1927.086 kb on + strand at 1927.146 kb on + strand at 1927.165 kb on + strand at 1927.167 kb on - strand at 1927.257 kb on + strand, within Dsui_1827 at 1927.382 kb on + strand, within Dsui_1827 at 1927.427 kb on + strand, within Dsui_1827 at 1927.556 kb on + strand at 1927.564 kb on - strand at 1927.616 kb on - strand at 1927.628 kb on + strand, within Dsui_1828 at 1927.628 kb on + strand, within Dsui_1828 at 1927.669 kb on - strand at 1927.687 kb on + strand, within Dsui_1828 at 1927.732 kb on + strand, within Dsui_1828 at 1927.873 kb on + strand, within Dsui_1828 at 1927.881 kb on - strand, within Dsui_1828 at 1927.941 kb on - strand, within Dsui_1828 at 1927.941 kb on - strand, within Dsui_1828 at 1928.008 kb on - strand, within Dsui_1828 at 1928.008 kb on - strand at 1928.008 kb on - strand, within Dsui_1828 at 1928.047 kb on - strand at 1928.055 kb on + strand, within Dsui_1828 at 1928.167 kb on + strand at 1928.238 kb on + strand at 1928.247 kb on - strand at 1928.313 kb on + strand, within Dsui_1829 at 1928.502 kb on - strand, within Dsui_1829
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,926,195 - Dsui_1825 0.84 -1.9 1,926,310 - +0.7 1,926,310 - +0.7 1,926,367 + -1.9 1,926,406 + -1.3 1,926,438 - -1.6 1,926,444 + -0.9 1,926,477 - -0.9 1,926,611 + +0.7 1,926,721 - +0.7 1,926,737 + +0.7 1,926,845 + +0.7 1,926,899 - Dsui_1826 0.80 +0.7 1,926,909 - Dsui_1826 0.83 -1.3 1,926,950 + +0.7 1,926,957 + +0.1 1,927,069 + -0.3 1,927,086 + +0.4 1,927,146 + -0.1 1,927,165 + -0.1 1,927,167 - -0.9 1,927,257 + Dsui_1827 0.23 +1.1 1,927,382 + Dsui_1827 0.57 +1.0 1,927,427 + Dsui_1827 0.69 +0.3 1,927,556 + +0.0 1,927,564 - -1.3 1,927,616 - +0.7 1,927,628 + Dsui_1828 0.11 -0.0 1,927,628 + Dsui_1828 0.11 +0.9 1,927,669 - +0.7 1,927,687 + Dsui_1828 0.21 +0.0 1,927,732 + Dsui_1828 0.29 +0.4 1,927,873 + Dsui_1828 0.53 -0.5 1,927,881 - Dsui_1828 0.55 -1.9 1,927,941 - Dsui_1828 0.65 +0.7 1,927,941 - Dsui_1828 0.65 +0.7 1,928,008 - Dsui_1828 0.77 -1.6 1,928,008 - +0.7 1,928,008 - Dsui_1828 0.77 +0.7 1,928,047 - +0.7 1,928,055 + Dsui_1828 0.85 -0.1 1,928,167 + +0.2 1,928,238 + +0.2 1,928,247 - +0.7 1,928,313 + Dsui_1829 0.12 -0.9 1,928,502 - Dsui_1829 0.60 -1.9
Or see this region's nucleotide sequence