Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1763 and Dsui_1764 are separated by 34 nucleotides Dsui_1764 and Dsui_1765 overlap by 11 nucleotides Dsui_1765 and Dsui_1766 overlap by 8 nucleotides Dsui_1766 and Dsui_1767 are separated by 94 nucleotides
Dsui_1763: Dsui_1763 - subfamily IIIC HAD-superfamily phosphatase, at 1,850,968 to 1,852,668
_1763
Dsui_1764: Dsui_1764 - acyl carrier protein, at 1,852,703 to 1,852,915
_1764
Dsui_1765: Dsui_1765 - acetyltransferase, ribosomal protein N-acetylase, at 1,852,905 to 1,853,489
_1765
Dsui_1766: Dsui_1766 - hypothetical protein, at 1,853,482 to 1,853,910
_1766
Dsui_1767: Dsui_1767 - methyltransferase family protein, at 1,854,005 to 1,854,658
_1767
Position (kb)
1852
1853
1854 Strain fitness (log2 ratio)
-2
-1
0
1 at 1851.922 kb on - strand, within Dsui_1763 at 1852.009 kb on + strand, within Dsui_1763 at 1852.009 kb on + strand, within Dsui_1763 at 1852.017 kb on - strand, within Dsui_1763 at 1852.035 kb on - strand, within Dsui_1763 at 1852.167 kb on + strand, within Dsui_1763 at 1852.175 kb on - strand, within Dsui_1763 at 1852.272 kb on + strand, within Dsui_1763 at 1852.327 kb on - strand at 1852.377 kb on + strand, within Dsui_1763 at 1852.551 kb on - strand at 1852.646 kb on + strand at 1852.646 kb on + strand at 1852.651 kb on + strand at 1852.651 kb on + strand at 1852.654 kb on - strand at 1852.654 kb on - strand at 1852.701 kb on + strand at 1852.773 kb on - strand, within Dsui_1764 at 1852.785 kb on + strand, within Dsui_1764 at 1852.785 kb on + strand, within Dsui_1764 at 1852.785 kb on + strand, within Dsui_1764 at 1852.785 kb on + strand, within Dsui_1764 at 1852.785 kb on + strand, within Dsui_1764 at 1852.793 kb on - strand at 1852.793 kb on - strand, within Dsui_1764 at 1852.793 kb on - strand, within Dsui_1764 at 1852.826 kb on - strand, within Dsui_1764 at 1852.847 kb on - strand, within Dsui_1764 at 1852.867 kb on - strand, within Dsui_1764 at 1853.026 kb on - strand, within Dsui_1765 at 1853.069 kb on - strand, within Dsui_1765 at 1853.075 kb on - strand, within Dsui_1765 at 1853.123 kb on + strand, within Dsui_1765 at 1853.131 kb on - strand, within Dsui_1765 at 1853.248 kb on - strand, within Dsui_1765 at 1853.276 kb on + strand, within Dsui_1765 at 1853.286 kb on + strand, within Dsui_1765 at 1853.327 kb on - strand, within Dsui_1765 at 1853.332 kb on - strand, within Dsui_1765 at 1853.392 kb on + strand, within Dsui_1765 at 1853.521 kb on + strand at 1853.522 kb on - strand at 1853.544 kb on - strand, within Dsui_1766 at 1853.624 kb on + strand, within Dsui_1766 at 1853.866 kb on + strand, within Dsui_1766 at 1853.928 kb on + strand at 1853.932 kb on - strand at 1853.984 kb on + strand at 1854.001 kb on + strand at 1854.001 kb on + strand at 1854.050 kb on + strand at 1854.050 kb on + strand at 1854.106 kb on + strand, within Dsui_1767 at 1854.149 kb on + strand, within Dsui_1767 at 1854.247 kb on + strand, within Dsui_1767 at 1854.272 kb on + strand, within Dsui_1767 at 1854.437 kb on + strand, within Dsui_1767 at 1854.476 kb on + strand, within Dsui_1767
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,851,922 - Dsui_1763 0.56 -1.4 1,852,009 + Dsui_1763 0.61 +0.5 1,852,009 + Dsui_1763 0.61 +0.0 1,852,017 - Dsui_1763 0.62 -2.0 1,852,035 - Dsui_1763 0.63 +0.6 1,852,167 + Dsui_1763 0.70 +0.7 1,852,175 - Dsui_1763 0.71 -0.4 1,852,272 + Dsui_1763 0.77 -0.1 1,852,327 - +0.6 1,852,377 + Dsui_1763 0.83 +0.3 1,852,551 - +0.6 1,852,646 + -0.2 1,852,646 + +0.1 1,852,651 + -0.5 1,852,651 + +0.3 1,852,654 - -0.4 1,852,654 - -1.0 1,852,701 + -0.1 1,852,773 - Dsui_1764 0.33 -0.4 1,852,785 + Dsui_1764 0.38 -0.1 1,852,785 + Dsui_1764 0.38 -0.3 1,852,785 + Dsui_1764 0.38 -0.3 1,852,785 + Dsui_1764 0.38 -0.3 1,852,785 + Dsui_1764 0.38 +0.2 1,852,793 - +0.6 1,852,793 - Dsui_1764 0.42 -1.4 1,852,793 - Dsui_1764 0.42 -1.0 1,852,826 - Dsui_1764 0.58 +0.6 1,852,847 - Dsui_1764 0.68 -0.4 1,852,867 - Dsui_1764 0.77 -0.4 1,853,026 - Dsui_1765 0.21 -2.6 1,853,069 - Dsui_1765 0.28 +0.6 1,853,075 - Dsui_1765 0.29 +0.6 1,853,123 + Dsui_1765 0.37 +0.5 1,853,131 - Dsui_1765 0.39 -1.4 1,853,248 - Dsui_1765 0.59 -1.7 1,853,276 + Dsui_1765 0.63 -0.1 1,853,286 + Dsui_1765 0.65 +0.3 1,853,327 - Dsui_1765 0.72 +0.6 1,853,332 - Dsui_1765 0.73 +0.6 1,853,392 + Dsui_1765 0.83 +0.5 1,853,521 + +0.2 1,853,522 - -0.3 1,853,544 - Dsui_1766 0.14 -1.0 1,853,624 + Dsui_1766 0.33 -0.1 1,853,866 + Dsui_1766 0.90 +0.2 1,853,928 + +0.9 1,853,932 - -0.4 1,853,984 + +0.1 1,854,001 + -0.3 1,854,001 + -0.5 1,854,050 + +0.0 1,854,050 + -1.1 1,854,106 + Dsui_1767 0.15 -0.8 1,854,149 + Dsui_1767 0.22 +0.7 1,854,247 + Dsui_1767 0.37 -0.5 1,854,272 + Dsui_1767 0.41 -0.4 1,854,437 + Dsui_1767 0.66 -0.2 1,854,476 + Dsui_1767 0.72 +0.1
Or see this region's nucleotide sequence