Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1679 and Dsui_1680 are separated by 1 nucleotides Dsui_1680 and Dsui_1681 are separated by 250 nucleotides Dsui_1681 and Dsui_1682 overlap by 17 nucleotides Dsui_1682 and Dsui_1683 are separated by 0 nucleotides
Dsui_1679: Dsui_1679 - Mg chelatase, cobalamin biosynthesis protein CobN, at 1,763,590 to 1,767,693
_1679
Dsui_1680: Dsui_1680 - TonB-dependent heme/hemoglobin receptor family protein/TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein, at 1,767,695 to 1,770,007
_1680
Dsui_1681: Dsui_1681 - hemin uptake protein, at 1,770,258 to 1,770,446
_1681
Dsui_1682: Dsui_1682 - biopolymer transport protein, at 1,770,430 to 1,770,861
_1682
Dsui_1683: Dsui_1683 - biopolymer transport protein, at 1,770,862 to 1,771,605
_1683
Position (kb)
1767
1768
1769
1770
1771 Strain fitness (log2 ratio)
-2
-1
0
1 at 1766.785 kb on + strand at 1766.792 kb on + strand at 1766.865 kb on + strand at 1766.898 kb on + strand, within Dsui_1679 at 1766.955 kb on - strand, within Dsui_1679 at 1767.037 kb on + strand at 1767.272 kb on - strand, within Dsui_1679 at 1767.272 kb on - strand, within Dsui_1679 at 1767.293 kb on + strand at 1767.316 kb on - strand at 1767.325 kb on - strand at 1767.356 kb on - strand at 1767.372 kb on - strand at 1767.445 kb on - strand at 1767.664 kb on + strand at 1767.765 kb on + strand at 1767.773 kb on - strand at 1767.804 kb on + strand at 1767.852 kb on + strand at 1767.880 kb on - strand at 1767.992 kb on - strand, within Dsui_1680 at 1767.997 kb on - strand, within Dsui_1680 at 1768.204 kb on - strand, within Dsui_1680 at 1768.223 kb on + strand at 1768.259 kb on + strand, within Dsui_1680 at 1768.301 kb on - strand, within Dsui_1680 at 1768.335 kb on + strand, within Dsui_1680 at 1768.335 kb on + strand, within Dsui_1680 at 1768.343 kb on - strand, within Dsui_1680 at 1768.355 kb on - strand at 1768.375 kb on - strand, within Dsui_1680 at 1768.600 kb on + strand at 1768.608 kb on - strand, within Dsui_1680 at 1768.744 kb on + strand, within Dsui_1680 at 1768.745 kb on + strand, within Dsui_1680 at 1768.789 kb on - strand at 1768.813 kb on - strand, within Dsui_1680 at 1768.927 kb on + strand, within Dsui_1680 at 1768.976 kb on - strand at 1769.030 kb on - strand, within Dsui_1680 at 1769.319 kb on + strand, within Dsui_1680 at 1769.443 kb on + strand, within Dsui_1680 at 1769.488 kb on + strand, within Dsui_1680 at 1769.488 kb on + strand, within Dsui_1680 at 1769.641 kb on + strand, within Dsui_1680 at 1769.674 kb on - strand, within Dsui_1680 at 1769.698 kb on + strand, within Dsui_1680 at 1769.698 kb on + strand, within Dsui_1680 at 1769.780 kb on - strand at 1769.908 kb on - strand at 1770.167 kb on - strand at 1770.211 kb on - strand at 1770.217 kb on + strand at 1770.248 kb on + strand at 1770.249 kb on - strand at 1770.449 kb on - strand at 1770.449 kb on - strand at 1770.484 kb on - strand, within Dsui_1682
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,766,785 + +0.5 1,766,792 + +0.5 1,766,865 + -0.5 1,766,898 + Dsui_1679 0.81 -1.1 1,766,955 - Dsui_1679 0.82 -1.8 1,767,037 + -1.8 1,767,272 - Dsui_1679 0.90 +0.5 1,767,272 - Dsui_1679 0.90 -1.5 1,767,293 + +0.5 1,767,316 - -1.1 1,767,325 - +0.5 1,767,356 - -0.5 1,767,372 - +0.5 1,767,445 - +0.5 1,767,664 + +0.5 1,767,765 + -0.5 1,767,773 - -0.5 1,767,804 + -0.1 1,767,852 + +0.5 1,767,880 - -0.5 1,767,992 - Dsui_1680 0.13 +0.5 1,767,997 - Dsui_1680 0.13 -0.5 1,768,204 - Dsui_1680 0.22 -1.9 1,768,223 + +0.5 1,768,259 + Dsui_1680 0.24 -1.8 1,768,301 - Dsui_1680 0.26 -0.5 1,768,335 + Dsui_1680 0.28 -2.5 1,768,335 + Dsui_1680 0.28 -1.1 1,768,343 - Dsui_1680 0.28 +0.5 1,768,355 - +0.5 1,768,375 - Dsui_1680 0.29 +0.5 1,768,600 + +0.5 1,768,608 - Dsui_1680 0.39 +0.5 1,768,744 + Dsui_1680 0.45 -0.5 1,768,745 + Dsui_1680 0.45 -1.1 1,768,789 - +0.5 1,768,813 - Dsui_1680 0.48 -1.1 1,768,927 + Dsui_1680 0.53 -1.1 1,768,976 - +0.5 1,769,030 - Dsui_1680 0.58 +0.5 1,769,319 + Dsui_1680 0.70 +0.5 1,769,443 + Dsui_1680 0.76 -1.1 1,769,488 + Dsui_1680 0.78 +0.5 1,769,488 + Dsui_1680 0.78 -0.5 1,769,641 + Dsui_1680 0.84 -0.5 1,769,674 - Dsui_1680 0.86 -0.5 1,769,698 + Dsui_1680 0.87 -0.5 1,769,698 + Dsui_1680 0.87 -0.5 1,769,780 - -2.7 1,769,908 - +0.5 1,770,167 - -0.3 1,770,211 - -0.2 1,770,217 + +0.5 1,770,248 + -0.5 1,770,249 - -0.1 1,770,449 - +1.2 1,770,449 - +1.1 1,770,484 - Dsui_1682 0.12 -0.2
Or see this region's nucleotide sequence