Strain Fitness in Dechlorosoma suillum PS around Dsui_1680

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1679 and Dsui_1680 are separated by 1 nucleotidesDsui_1680 and Dsui_1681 are separated by 250 nucleotidesDsui_1681 and Dsui_1682 overlap by 17 nucleotidesDsui_1682 and Dsui_1683 are separated by 0 nucleotides Dsui_1679: Dsui_1679 - Mg chelatase, cobalamin biosynthesis protein CobN, at 1,763,590 to 1,767,693 _1679 Dsui_1680: Dsui_1680 - TonB-dependent heme/hemoglobin receptor family protein/TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein, at 1,767,695 to 1,770,007 _1680 Dsui_1681: Dsui_1681 - hemin uptake protein, at 1,770,258 to 1,770,446 _1681 Dsui_1682: Dsui_1682 - biopolymer transport protein, at 1,770,430 to 1,770,861 _1682 Dsui_1683: Dsui_1683 - biopolymer transport protein, at 1,770,862 to 1,771,605 _1683 Position (kb) 1767 1768 1769 1770 1771Strain fitness (log2 ratio) -2 -1 0 1at 1766.785 kb on + strandat 1766.792 kb on + strandat 1766.865 kb on + strandat 1766.898 kb on + strand, within Dsui_1679at 1766.955 kb on - strand, within Dsui_1679at 1767.037 kb on + strandat 1767.272 kb on - strand, within Dsui_1679at 1767.272 kb on - strand, within Dsui_1679at 1767.293 kb on + strandat 1767.316 kb on - strandat 1767.325 kb on - strandat 1767.356 kb on - strandat 1767.372 kb on - strandat 1767.445 kb on - strandat 1767.664 kb on + strandat 1767.765 kb on + strandat 1767.773 kb on - strandat 1767.804 kb on + strandat 1767.852 kb on + strandat 1767.880 kb on - strandat 1767.992 kb on - strand, within Dsui_1680at 1767.997 kb on - strand, within Dsui_1680at 1768.204 kb on - strand, within Dsui_1680at 1768.223 kb on + strandat 1768.259 kb on + strand, within Dsui_1680at 1768.301 kb on - strand, within Dsui_1680at 1768.335 kb on + strand, within Dsui_1680at 1768.335 kb on + strand, within Dsui_1680at 1768.343 kb on - strand, within Dsui_1680at 1768.355 kb on - strandat 1768.375 kb on - strand, within Dsui_1680at 1768.600 kb on + strandat 1768.608 kb on - strand, within Dsui_1680at 1768.744 kb on + strand, within Dsui_1680at 1768.745 kb on + strand, within Dsui_1680at 1768.789 kb on - strandat 1768.813 kb on - strand, within Dsui_1680at 1768.927 kb on + strand, within Dsui_1680at 1768.976 kb on - strandat 1769.030 kb on - strand, within Dsui_1680at 1769.319 kb on + strand, within Dsui_1680at 1769.443 kb on + strand, within Dsui_1680at 1769.488 kb on + strand, within Dsui_1680at 1769.488 kb on + strand, within Dsui_1680at 1769.641 kb on + strand, within Dsui_1680at 1769.674 kb on - strand, within Dsui_1680at 1769.698 kb on + strand, within Dsui_1680at 1769.698 kb on + strand, within Dsui_1680at 1769.780 kb on - strandat 1769.908 kb on - strandat 1770.167 kb on - strandat 1770.211 kb on - strandat 1770.217 kb on + strandat 1770.248 kb on + strandat 1770.249 kb on - strandat 1770.449 kb on - strandat 1770.449 kb on - strandat 1770.484 kb on - strand, within Dsui_1682

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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1,766,785 + +0.5
1,766,792 + +0.5
1,766,865 + -0.5
1,766,898 + Dsui_1679 0.81 -1.1
1,766,955 - Dsui_1679 0.82 -1.8
1,767,037 + -1.8
1,767,272 - Dsui_1679 0.90 +0.5
1,767,272 - Dsui_1679 0.90 -1.5
1,767,293 + +0.5
1,767,316 - -1.1
1,767,325 - +0.5
1,767,356 - -0.5
1,767,372 - +0.5
1,767,445 - +0.5
1,767,664 + +0.5
1,767,765 + -0.5
1,767,773 - -0.5
1,767,804 + -0.1
1,767,852 + +0.5
1,767,880 - -0.5
1,767,992 - Dsui_1680 0.13 +0.5
1,767,997 - Dsui_1680 0.13 -0.5
1,768,204 - Dsui_1680 0.22 -1.9
1,768,223 + +0.5
1,768,259 + Dsui_1680 0.24 -1.8
1,768,301 - Dsui_1680 0.26 -0.5
1,768,335 + Dsui_1680 0.28 -2.5
1,768,335 + Dsui_1680 0.28 -1.1
1,768,343 - Dsui_1680 0.28 +0.5
1,768,355 - +0.5
1,768,375 - Dsui_1680 0.29 +0.5
1,768,600 + +0.5
1,768,608 - Dsui_1680 0.39 +0.5
1,768,744 + Dsui_1680 0.45 -0.5
1,768,745 + Dsui_1680 0.45 -1.1
1,768,789 - +0.5
1,768,813 - Dsui_1680 0.48 -1.1
1,768,927 + Dsui_1680 0.53 -1.1
1,768,976 - +0.5
1,769,030 - Dsui_1680 0.58 +0.5
1,769,319 + Dsui_1680 0.70 +0.5
1,769,443 + Dsui_1680 0.76 -1.1
1,769,488 + Dsui_1680 0.78 +0.5
1,769,488 + Dsui_1680 0.78 -0.5
1,769,641 + Dsui_1680 0.84 -0.5
1,769,674 - Dsui_1680 0.86 -0.5
1,769,698 + Dsui_1680 0.87 -0.5
1,769,698 + Dsui_1680 0.87 -0.5
1,769,780 - -2.7
1,769,908 - +0.5
1,770,167 - -0.3
1,770,211 - -0.2
1,770,217 + +0.5
1,770,248 + -0.5
1,770,249 - -0.1
1,770,449 - +1.2
1,770,449 - +1.1
1,770,484 - Dsui_1682 0.12 -0.2

Or see this region's nucleotide sequence