Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1551 and Dsui_1552 are separated by 67 nucleotides Dsui_1552 and Dsui_1553 are separated by 1 nucleotides Dsui_1553 and Dsui_1554 are separated by 61 nucleotides
Dsui_1551: Dsui_1551 - DNA mismatch repair protein MutL, at 1,613,388 to 1,615,244
_1551
Dsui_1552: Dsui_1552 - tRNA isopentenyltransferase MiaA, at 1,615,312 to 1,616,259
_1552
Dsui_1553: Dsui_1553 - regulator of competence-specific genes, at 1,616,261 to 1,616,635
_1553
Dsui_1554: Dsui_1554 - PAS domain S-box, at 1,616,697 to 1,619,519
_1554
Position (kb)
1615
1616
1617 Strain fitness (log2 ratio)
-2
-1
0
1 at 1614.341 kb on + strand, within Dsui_1551 at 1614.353 kb on + strand, within Dsui_1551 at 1614.361 kb on - strand, within Dsui_1551 at 1614.405 kb on - strand at 1614.517 kb on + strand, within Dsui_1551 at 1614.743 kb on + strand, within Dsui_1551 at 1614.797 kb on - strand, within Dsui_1551 at 1614.968 kb on - strand, within Dsui_1551 at 1614.978 kb on + strand, within Dsui_1551 at 1614.987 kb on - strand, within Dsui_1551 at 1615.019 kb on + strand, within Dsui_1551 at 1615.059 kb on + strand at 1615.202 kb on + strand at 1615.262 kb on + strand at 1615.601 kb on + strand, within Dsui_1552 at 1616.279 kb on - strand at 1616.317 kb on - strand, within Dsui_1553 at 1616.442 kb on + strand, within Dsui_1553 at 1616.466 kb on + strand, within Dsui_1553 at 1616.576 kb on - strand at 1616.935 kb on - strand at 1617.172 kb on + strand, within Dsui_1554 at 1617.248 kb on + strand, within Dsui_1554 at 1617.257 kb on - strand, within Dsui_1554
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,614,341 + Dsui_1551 0.51 -0.7 1,614,353 + Dsui_1551 0.52 -1.6 1,614,361 - Dsui_1551 0.52 -2.1 1,614,405 - +0.5 1,614,517 + Dsui_1551 0.61 +0.2 1,614,743 + Dsui_1551 0.73 -0.7 1,614,797 - Dsui_1551 0.76 -2.1 1,614,968 - Dsui_1551 0.85 -0.5 1,614,978 + Dsui_1551 0.86 +1.0 1,614,987 - Dsui_1551 0.86 -0.5 1,615,019 + Dsui_1551 0.88 -0.2 1,615,059 + -0.8 1,615,202 + -2.1 1,615,262 + -0.1 1,615,601 + Dsui_1552 0.30 +0.5 1,616,279 - -1.5 1,616,317 - Dsui_1553 0.15 -1.1 1,616,442 + Dsui_1553 0.48 -0.5 1,616,466 + Dsui_1553 0.55 -1.1 1,616,576 - +0.5 1,616,935 - +0.5 1,617,172 + Dsui_1554 0.17 +0.6 1,617,248 + Dsui_1554 0.20 +0.5 1,617,257 - Dsui_1554 0.20 -0.5
Or see this region's nucleotide sequence