Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1546 and Dsui_1547 are separated by 36 nucleotides Dsui_1547 and Dsui_1548 are separated by 67 nucleotides Dsui_1548 and Dsui_1549 are separated by 25 nucleotides
Dsui_1546: Dsui_1546 - hypothetical protein, at 1,606,515 to 1,607,267
_1546
Dsui_1547: Dsui_1547 - putative membrane-associated protein, at 1,607,304 to 1,607,966
_1547
Dsui_1548: Dsui_1548 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,608,034 to 1,608,480
_1548
Dsui_1549: Dsui_1549 - PAS domain S-box, at 1,608,506 to 1,611,505
_1549
Position (kb)
1608
1609 Strain fitness (log2 ratio)
-2
-1
0
1 at 1607.050 kb on - strand, within Dsui_1546 at 1607.050 kb on - strand, within Dsui_1546 at 1607.184 kb on - strand, within Dsui_1546 at 1607.225 kb on + strand at 1607.233 kb on - strand at 1607.319 kb on - strand at 1607.986 kb on - strand at 1608.008 kb on - strand at 1608.008 kb on - strand at 1608.008 kb on - strand at 1608.037 kb on + strand at 1608.074 kb on + strand at 1608.074 kb on + strand at 1608.074 kb on + strand at 1608.082 kb on - strand, within Dsui_1548 at 1608.084 kb on + strand, within Dsui_1548 at 1608.174 kb on + strand at 1608.186 kb on + strand at 1608.255 kb on + strand at 1608.263 kb on - strand at 1608.305 kb on + strand, within Dsui_1548 at 1608.342 kb on + strand, within Dsui_1548 at 1608.353 kb on + strand at 1608.513 kb on + strand at 1608.531 kb on - strand at 1608.577 kb on - strand at 1609.074 kb on + strand at 1609.150 kb on + strand, within Dsui_1549 at 1609.172 kb on - strand, within Dsui_1549 at 1609.384 kb on - strand, within Dsui_1549
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,607,050 - Dsui_1546 0.71 +1.3 1,607,050 - Dsui_1546 0.71 +0.4 1,607,184 - Dsui_1546 0.89 -0.2 1,607,225 + -0.5 1,607,233 - -0.2 1,607,319 - -0.8 1,607,986 - -1.8 1,608,008 - -1.1 1,608,008 - +1.7 1,608,008 - -1.6 1,608,037 + -0.5 1,608,074 + -1.8 1,608,074 + +0.5 1,608,074 + -1.8 1,608,082 - Dsui_1548 0.11 +0.5 1,608,084 + Dsui_1548 0.11 -1.1 1,608,174 + +0.5 1,608,186 + -0.5 1,608,255 + +0.5 1,608,263 - +0.5 1,608,305 + Dsui_1548 0.61 -1.1 1,608,342 + Dsui_1548 0.69 +0.5 1,608,353 + -0.5 1,608,513 + +0.5 1,608,531 - +0.5 1,608,577 - -0.5 1,609,074 + +0.5 1,609,150 + Dsui_1549 0.21 -0.5 1,609,172 - Dsui_1549 0.22 +0.5 1,609,384 - Dsui_1549 0.29 -1.1
Or see this region's nucleotide sequence