Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1542 and Dsui_1543 are separated by 9 nucleotides Dsui_1543 and Dsui_1544 are separated by 73 nucleotides
Dsui_1542: Dsui_1542 - small-conductance mechanosensitive channel, at 1,602,128 to 1,603,423
_1542
Dsui_1543: Dsui_1543 - tRNA/rRNA cytosine-C5-methylase, at 1,603,433 to 1,604,761
_1543
Dsui_1544: Dsui_1544 - Protein of unknown function (DUF3108), at 1,604,835 to 1,605,572
_1544
Position (kb)
1603
1604
1605 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1602.485 kb on + strand, within Dsui_1542 at 1602.509 kb on - strand, within Dsui_1542 at 1602.556 kb on - strand, within Dsui_1542 at 1602.770 kb on - strand, within Dsui_1542 at 1602.817 kb on - strand, within Dsui_1542 at 1602.888 kb on - strand, within Dsui_1542 at 1602.936 kb on - strand, within Dsui_1542 at 1602.948 kb on - strand, within Dsui_1542 at 1603.031 kb on - strand, within Dsui_1542 at 1603.118 kb on - strand, within Dsui_1542 at 1603.334 kb on - strand at 1603.430 kb on + strand at 1603.430 kb on + strand at 1603.652 kb on + strand, within Dsui_1543 at 1603.652 kb on + strand, within Dsui_1543 at 1603.660 kb on - strand, within Dsui_1543 at 1603.661 kb on - strand, within Dsui_1543 at 1603.770 kb on - strand, within Dsui_1543 at 1603.797 kb on - strand, within Dsui_1543 at 1603.797 kb on - strand, within Dsui_1543 at 1603.892 kb on - strand, within Dsui_1543 at 1603.894 kb on + strand at 1603.894 kb on + strand at 1603.923 kb on - strand, within Dsui_1543 at 1604.095 kb on + strand at 1604.254 kb on + strand at 1604.280 kb on - strand, within Dsui_1543 at 1604.307 kb on + strand at 1604.378 kb on + strand, within Dsui_1543 at 1604.380 kb on - strand, within Dsui_1543 at 1604.568 kb on - strand, within Dsui_1543 at 1605.085 kb on + strand at 1605.113 kb on - strand, within Dsui_1544 at 1605.120 kb on - strand, within Dsui_1544 at 1605.303 kb on + strand at 1605.397 kb on + strand, within Dsui_1544 at 1605.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,602,485 + Dsui_1542 0.28 +0.5 1,602,509 - Dsui_1542 0.29 +0.8 1,602,556 - Dsui_1542 0.33 +0.4 1,602,770 - Dsui_1542 0.50 -0.6 1,602,817 - Dsui_1542 0.53 -0.3 1,602,888 - Dsui_1542 0.59 -0.7 1,602,936 - Dsui_1542 0.62 -0.1 1,602,948 - Dsui_1542 0.63 -1.8 1,603,031 - Dsui_1542 0.70 -0.3 1,603,118 - Dsui_1542 0.76 -0.6 1,603,334 - -0.7 1,603,430 + +0.5 1,603,430 + -1.1 1,603,652 + Dsui_1543 0.16 -1.5 1,603,652 + Dsui_1543 0.16 +0.5 1,603,660 - Dsui_1543 0.17 +0.4 1,603,661 - Dsui_1543 0.17 -0.2 1,603,770 - Dsui_1543 0.25 +0.5 1,603,797 - Dsui_1543 0.27 -0.2 1,603,797 - Dsui_1543 0.27 +0.5 1,603,892 - Dsui_1543 0.35 +0.1 1,603,894 + +0.5 1,603,894 + +0.5 1,603,923 - Dsui_1543 0.37 -1.6 1,604,095 + -0.5 1,604,254 + +0.5 1,604,280 - Dsui_1543 0.64 -0.2 1,604,307 + +0.5 1,604,378 + Dsui_1543 0.71 -2.3 1,604,380 - Dsui_1543 0.71 +0.1 1,604,568 - Dsui_1543 0.85 +0.6 1,605,085 + +0.5 1,605,113 - Dsui_1544 0.38 -3.2 1,605,120 - Dsui_1544 0.39 -3.6 1,605,303 + -1.5 1,605,397 + Dsui_1544 0.76 -0.5 1,605,751 - +0.5
Or see this region's nucleotide sequence