Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1482 and Dsui_1483 are separated by 42 nucleotides Dsui_1483 and Dsui_1484 are separated by 525 nucleotides Dsui_1484 and Dsui_1485 are separated by 92 nucleotides
Dsui_1482: Dsui_1482 - hypothetical protein, at 1,547,219 to 1,547,503
_1482
Dsui_1483: Dsui_1483 - putative transcription regulator containing HTH domain, at 1,547,546 to 1,548,760
_1483
Dsui_1484: Dsui_1484 - hypothetical protein, at 1,549,286 to 1,549,444
_1484
Dsui_1485: Dsui_1485 - NC domain protein, at 1,549,537 to 1,549,905
_1485
Position (kb)
1547
1548
1549 Strain fitness (log2 ratio)
-2
-1
0
1 at 1546.588 kb on - strand at 1546.645 kb on + strand at 1546.646 kb on - strand at 1546.650 kb on + strand at 1546.652 kb on + strand at 1546.655 kb on - strand at 1546.660 kb on - strand at 1546.711 kb on - strand at 1546.773 kb on + strand at 1546.776 kb on - strand at 1546.776 kb on - strand at 1546.960 kb on + strand at 1546.960 kb on + strand at 1546.999 kb on - strand at 1547.037 kb on + strand at 1547.108 kb on + strand at 1547.241 kb on + strand at 1547.445 kb on + strand, within Dsui_1482 at 1547.453 kb on - strand, within Dsui_1482 at 1547.453 kb on - strand, within Dsui_1482 at 1547.468 kb on - strand, within Dsui_1482 at 1547.507 kb on + strand at 1548.731 kb on + strand at 1548.896 kb on - strand at 1548.969 kb on - strand at 1548.971 kb on + strand at 1549.081 kb on + strand at 1549.110 kb on - strand at 1549.127 kb on + strand at 1549.160 kb on - strand at 1549.247 kb on - strand at 1549.495 kb on + strand at 1549.514 kb on - strand at 1549.519 kb on - strand at 1549.548 kb on + strand at 1549.599 kb on + strand, within Dsui_1485 at 1549.607 kb on - strand, within Dsui_1485 at 1549.757 kb on - strand, within Dsui_1485
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,546,588 - -1.5 1,546,645 + -2.5 1,546,646 - +0.2 1,546,650 + -1.5 1,546,652 + +0.5 1,546,655 - +0.2 1,546,660 - -0.8 1,546,711 - -1.1 1,546,773 + -2.3 1,546,776 - -1.1 1,546,776 - -0.3 1,546,960 + +0.5 1,546,960 + +0.5 1,546,999 - -0.5 1,547,037 + -1.5 1,547,108 + -0.5 1,547,241 + -0.5 1,547,445 + Dsui_1482 0.79 -0.0 1,547,453 - Dsui_1482 0.82 +0.5 1,547,453 - Dsui_1482 0.82 +0.5 1,547,468 - Dsui_1482 0.87 +0.5 1,547,507 + +0.5 1,548,731 + -0.3 1,548,896 - +1.1 1,548,969 - +0.4 1,548,971 + -0.2 1,549,081 + -0.2 1,549,110 - -1.8 1,549,127 + +0.8 1,549,160 - -0.5 1,549,247 - +0.5 1,549,495 + +0.0 1,549,514 - -2.7 1,549,519 - -2.7 1,549,548 + -0.4 1,549,599 + Dsui_1485 0.17 -0.6 1,549,607 - Dsui_1485 0.19 -1.1 1,549,757 - Dsui_1485 0.60 +0.5
Or see this region's nucleotide sequence