Strain Fitness in Dechlorosoma suillum PS around Dsui_1482

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1481 and Dsui_1482 are separated by 711 nucleotidesDsui_1482 and Dsui_1483 are separated by 42 nucleotides Dsui_1481: Dsui_1481 - hypothetical protein, at 1,545,389 to 1,546,507 _1481 Dsui_1482: Dsui_1482 - hypothetical protein, at 1,547,219 to 1,547,503 _1482 Dsui_1483: Dsui_1483 - putative transcription regulator containing HTH domain, at 1,547,546 to 1,548,760 _1483 Position (kb) 1547 1548Strain fitness (log2 ratio) -2 -1 0 1 2at 1546.272 kb on - strand, within Dsui_1481at 1546.335 kb on + strand, within Dsui_1481at 1546.468 kb on - strandat 1546.530 kb on + strandat 1546.538 kb on - strandat 1546.588 kb on - strandat 1546.645 kb on + strandat 1546.646 kb on - strandat 1546.650 kb on + strandat 1546.652 kb on + strandat 1546.655 kb on - strandat 1546.660 kb on - strandat 1546.711 kb on - strandat 1546.773 kb on + strandat 1546.776 kb on - strandat 1546.776 kb on - strandat 1546.960 kb on + strandat 1546.960 kb on + strandat 1546.999 kb on - strandat 1547.037 kb on + strandat 1547.108 kb on + strandat 1547.241 kb on + strandat 1547.445 kb on + strand, within Dsui_1482at 1547.453 kb on - strand, within Dsui_1482at 1547.453 kb on - strand, within Dsui_1482at 1547.468 kb on - strand, within Dsui_1482at 1547.507 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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1,546,272 - Dsui_1481 0.79 +2.1
1,546,335 + Dsui_1481 0.85 -1.1
1,546,468 - +0.4
1,546,530 + -0.5
1,546,538 - +1.1
1,546,588 - -1.5
1,546,645 + -2.5
1,546,646 - +0.2
1,546,650 + -1.5
1,546,652 + +0.5
1,546,655 - +0.2
1,546,660 - -0.8
1,546,711 - -1.1
1,546,773 + -2.3
1,546,776 - -1.1
1,546,776 - -0.3
1,546,960 + +0.5
1,546,960 + +0.5
1,546,999 - -0.5
1,547,037 + -1.5
1,547,108 + -0.5
1,547,241 + -0.5
1,547,445 + Dsui_1482 0.79 -0.0
1,547,453 - Dsui_1482 0.82 +0.5
1,547,453 - Dsui_1482 0.82 +0.5
1,547,468 - Dsui_1482 0.87 +0.5
1,547,507 + +0.5

Or see this region's nucleotide sequence