Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1400 and Dsui_1401 are separated by 83 nucleotides Dsui_1401 and Dsui_1402 are separated by 97 nucleotides Dsui_1402 and Dsui_1403 overlap by 1 nucleotides Dsui_1403 and Dsui_1404 are separated by 19 nucleotides
Dsui_1400: Dsui_1400 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 1,460,525 to 1,460,995
_1400
Dsui_1401: Dsui_1401 - surface lipoprotein, at 1,461,079 to 1,461,798
_1401
Dsui_1402: Dsui_1402 - ABC-type transport system involved in resistance to organic solvents, auxiliary component, at 1,461,896 to 1,462,525
_1402
Dsui_1403: Dsui_1403 - putative NTP binding protein (contains STAS domain), at 1,462,525 to 1,462,812
_1403
Dsui_1404: Dsui_1404 - ABC-type multidrug transport system, ATPase component, at 1,462,832 to 1,463,755
_1404
Position (kb)
1461
1462
1463 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1460.949 kb on + strand at 1460.986 kb on - strand at 1461.062 kb on - strand at 1461.095 kb on - strand at 1461.099 kb on + strand at 1461.120 kb on + strand at 1461.120 kb on + strand at 1461.150 kb on - strand at 1461.190 kb on + strand, within Dsui_1401 at 1461.191 kb on - strand, within Dsui_1401 at 1461.228 kb on + strand, within Dsui_1401 at 1461.240 kb on + strand, within Dsui_1401 at 1461.284 kb on - strand at 1461.291 kb on + strand, within Dsui_1401 at 1461.637 kb on - strand at 1461.879 kb on + strand at 1462.045 kb on + strand, within Dsui_1402 at 1462.141 kb on + strand, within Dsui_1402 at 1462.336 kb on + strand, within Dsui_1402 at 1462.514 kb on + strand at 1462.562 kb on + strand, within Dsui_1403 at 1462.806 kb on + strand at 1462.807 kb on + strand at 1462.990 kb on + strand, within Dsui_1404 at 1463.451 kb on + strand, within Dsui_1404
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,460,949 + -4.9 1,460,986 - -0.5 1,461,062 - +0.5 1,461,095 - +0.5 1,461,099 + -3.9 1,461,120 + -2.9 1,461,120 + -4.0 1,461,150 - +0.5 1,461,190 + Dsui_1401 0.15 -3.9 1,461,191 - Dsui_1401 0.16 +0.5 1,461,228 + Dsui_1401 0.21 -3.9 1,461,240 + Dsui_1401 0.22 -3.2 1,461,284 - -0.5 1,461,291 + Dsui_1401 0.29 -4.6 1,461,637 - +0.5 1,461,879 + -4.3 1,462,045 + Dsui_1402 0.24 -4.5 1,462,141 + Dsui_1402 0.39 -4.4 1,462,336 + Dsui_1402 0.70 -2.1 1,462,514 + -2.4 1,462,562 + Dsui_1403 0.13 -3.9 1,462,806 + +0.9 1,462,807 + +0.5 1,462,990 + Dsui_1404 0.17 -0.4 1,463,451 + Dsui_1404 0.67 -1.3
Or see this region's nucleotide sequence