Experiment: ALP with Fusidic 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1267 and Dsui_1268 are separated by 124 nucleotides Dsui_1268 and Dsui_1269 are separated by 124 nucleotides Dsui_1269 and Dsui_1270 are separated by 33 nucleotides
Dsui_1267: Dsui_1267 - riboflavin biosynthesis protein RibD, at 1,330,399 to 1,331,496
_1267
Dsui_1268: Dsui_1268 - dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis, at 1,331,621 to 1,332,370
_1268
Dsui_1269: Dsui_1269 - hypothetical protein, at 1,332,495 to 1,332,917
_1269
Dsui_1270: Dsui_1270 - C-terminal processing peptidase, at 1,332,951 to 1,334,354
_1270
Position (kb)
1332
1333 Strain fitness (log2 ratio)
-2
-1
0
1 at 1332.478 kb on - strand at 1332.573 kb on - strand, within Dsui_1269 at 1332.605 kb on + strand, within Dsui_1269 at 1332.620 kb on + strand, within Dsui_1269 at 1332.629 kb on + strand, within Dsui_1269 at 1332.647 kb on - strand, within Dsui_1269 at 1332.653 kb on + strand at 1332.716 kb on + strand, within Dsui_1269 at 1332.748 kb on - strand, within Dsui_1269 at 1332.949 kb on + strand at 1332.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml remove 1,332,478 - -0.1 1,332,573 - Dsui_1269 0.18 -0.3 1,332,605 + Dsui_1269 0.26 +0.4 1,332,620 + Dsui_1269 0.30 -0.6 1,332,629 + Dsui_1269 0.32 -0.6 1,332,647 - Dsui_1269 0.36 +0.2 1,332,653 + +0.4 1,332,716 + Dsui_1269 0.52 -2.6 1,332,748 - Dsui_1269 0.60 -0.0 1,332,949 + -0.6 1,332,987 - -0.5
Or see this region's nucleotide sequence