Strain Fitness in Dechlorosoma suillum PS around Dsui_1249

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1248 and Dsui_1249 are separated by 71 nucleotidesDsui_1249 and Dsui_1250 overlap by 4 nucleotides Dsui_1248: Dsui_1248 - protein containing C-terminal region/beta chain of methionyl-tRNA synthetase, at 1,309,794 to 1,311,923 _1248 Dsui_1249: Dsui_1249 - hypothetical protein, at 1,311,995 to 1,312,267 _1249 Dsui_1250: Dsui_1250 - sulfate permease-like transporter, MFS superfamily, at 1,312,264 to 1,313,931 _1250 Position (kb) 1311 1312 1313Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1311.425 kb on + strand, within Dsui_1248at 1311.972 kb on + strandat 1311.979 kb on + strandat 1312.001 kb on - strandat 1312.020 kb on + strandat 1312.056 kb on + strand, within Dsui_1249at 1312.135 kb on + strand, within Dsui_1249at 1312.187 kb on - strand, within Dsui_1249at 1312.192 kb on + strand, within Dsui_1249at 1312.200 kb on - strand, within Dsui_1249at 1312.224 kb on + strand, within Dsui_1249at 1312.513 kb on + strand, within Dsui_1250at 1312.594 kb on + strand, within Dsui_1250at 1312.594 kb on + strand, within Dsui_1250at 1312.602 kb on - strand, within Dsui_1250at 1312.602 kb on - strandat 1312.612 kb on + strand, within Dsui_1250at 1312.798 kb on - strand, within Dsui_1250at 1312.808 kb on - strand, within Dsui_1250at 1312.861 kb on - strand, within Dsui_1250at 1312.865 kb on - strand, within Dsui_1250at 1313.009 kb on + strand, within Dsui_1250at 1313.017 kb on - strand, within Dsui_1250at 1313.063 kb on - strand, within Dsui_1250at 1313.165 kb on + strand, within Dsui_1250at 1313.213 kb on + strand, within Dsui_1250at 1313.221 kb on - strand, within Dsui_1250at 1313.265 kb on - strand, within Dsui_1250at 1313.266 kb on - strand, within Dsui_1250

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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1,311,425 + Dsui_1248 0.77 +0.2
1,311,972 + -0.5
1,311,979 + -0.7
1,312,001 - -1.5
1,312,020 + -0.7
1,312,056 + Dsui_1249 0.22 -0.5
1,312,135 + Dsui_1249 0.51 -0.3
1,312,187 - Dsui_1249 0.70 +0.5
1,312,192 + Dsui_1249 0.72 -1.2
1,312,200 - Dsui_1249 0.75 -1.5
1,312,224 + Dsui_1249 0.84 -0.0
1,312,513 + Dsui_1250 0.15 -0.1
1,312,594 + Dsui_1250 0.20 +1.0
1,312,594 + Dsui_1250 0.20 -1.8
1,312,602 - Dsui_1250 0.20 +0.5
1,312,602 - +0.5
1,312,612 + Dsui_1250 0.21 -0.7
1,312,798 - Dsui_1250 0.32 -0.5
1,312,808 - Dsui_1250 0.33 +0.5
1,312,861 - Dsui_1250 0.36 +0.3
1,312,865 - Dsui_1250 0.36 -1.5
1,313,009 + Dsui_1250 0.45 +2.2
1,313,017 - Dsui_1250 0.45 -0.5
1,313,063 - Dsui_1250 0.48 +0.5
1,313,165 + Dsui_1250 0.54 -0.3
1,313,213 + Dsui_1250 0.57 -0.5
1,313,221 - Dsui_1250 0.57 +1.5
1,313,265 - Dsui_1250 0.60 -1.1
1,313,266 - Dsui_1250 0.60 -2.8

Or see this region's nucleotide sequence