Strain Fitness in Dechlorosoma suillum PS around Dsui_1201

Experiment: ALP with Fusidic 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1200 and Dsui_1201 are separated by 22 nucleotidesDsui_1201 and Dsui_1202 are separated by 4 nucleotidesDsui_1202 and Dsui_1203 overlap by 23 nucleotides Dsui_1200: Dsui_1200 - glycyl-tRNA synthetase, tetrameric type, beta subunit, at 1,252,378 to 1,254,621 _1200 Dsui_1201: Dsui_1201 - histidinol-phosphate phosphatase family protein, at 1,254,644 to 1,255,192 _1201 Dsui_1202: Dsui_1202 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 1,255,197 to 1,255,940 _1202 Dsui_1203: Dsui_1203 - putative metal-dependent hydrolase, at 1,255,918 to 1,256,694 _1203 Position (kb) 1254 1255 1256Strain fitness (log2 ratio) -2 -1 0 1at 1256.077 kb on - strand, within Dsui_1203at 1256.089 kb on - strand, within Dsui_1203at 1256.121 kb on - strand, within Dsui_1203at 1256.166 kb on - strand, within Dsui_1203at 1256.171 kb on - strand, within Dsui_1203at 1256.181 kb on + strand, within Dsui_1203

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.01 mg/ml
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1,256,077 - Dsui_1203 0.20 -1.6
1,256,089 - Dsui_1203 0.22 -1.9
1,256,121 - Dsui_1203 0.26 +0.4
1,256,166 - Dsui_1203 0.32 -1.2
1,256,171 - Dsui_1203 0.33 +0.4
1,256,181 + Dsui_1203 0.34 -0.1

Or see this region's nucleotide sequence